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Science based solutions to protect tropical ecosystems

What is blue carbon?

Marine and coastal ecosystems are very efficient at capturing carbon – this is called blue carbon. Mangroves, saltmarshes, seagrass meadows, and coastal wetlands all capture and store blue carbon, contributing to mitigating climate change. But if these ecosystems are destroyed, this carbon is released – and no more is captured.


Our researchers are trialling restoration methods for a range of coastal habitats, assessing the health of these ecosystems after extreme climate events, and setting new standards for how blue carbon is measured.

Sustainable water security in northern Australia

Northern Australia boasts vast land areas, ample rainfall, and abundant water resources, making it a favourable region for agricultural expansion and developing water security. But expansion could pose a significant threat to the region's biodiverse aquatic ecosystems, disrupting water quality and the natural flow essential to ecosystems in both wet and dry seasons.


Our researchers are exploring how to maximise water resource allocation across the vast and diverse landscapes of Northern Australia, advising policymakers on potential impacts to ecosystems.

Assessing the impacts of flooding after Tropical Cyclone Jasper

Tropical Cyclone Jasper made landfall in Far North Queensland in December 2023, bringing record-breaking rainfall to the region and causing widespread flooding that washed sediments across coastal habitats. The affected region included part of the Wet Tropics of Queensland and Great Barrier Reef World Heritage areas.


We partnered with Rangers to survey coastal habitats in 2024 and 2025 and assess the impacts of the flooding on mangrove forests, inshore coral reefs, and seagrass meadows.

Our webinar series

The TropWATER webinar series showcases our latest projects, partnerships, and monitoring programs, applying science-based solutions to protect, manage, and restore tropical aquatic ecosystems.


Watch recordings of past events below and sign up to hear about upcoming webinars.

Our eDNA lab

As northern Australia's leading eDNA experts, we use genetic clues to revolutionise how to detect invasive and threatened species.


We’ve contributed to biosecurity surveillance, environmental impact assessments, tracking fish communities in Australian waterways, locating threatened species, and advancing eDNA science itself, while working with Traditional Owners, community groups, governments, councils and regional bodies. We also lead advances in eDNA techniques and offer commercial and research services.

Our research and projects

We provide industries, communities and governments with science-based solutions to better manage, protect and restore our tropical water ecosystems. Explore our research and projects.

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Wetlands and freshwater habitats

Our wetlands team use innovative and science-based solutions to restore, preserve, and rehabilitate coastal wetlands.

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Seagrass habitats

We house Australia's largest seagrass research group and have more than 40 years of experience in seagrass research and monitoring across the Great Barrier Reef, Great Sandy Strait and northern Australia.

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Mangroves

Our projects focus on monitoring, assessing, and restoring mangrove ecosystems to address environmental changes and impacts. We provide expert advice, conduct detailed floristic surveys, and develop effective mitigation strategies.

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Marine megafauna

We use a combination of conventional and innovative research using cutting-edge technology to monitor the trends in the abundance, distribution and habitat use of megafauna across Australia and globally.

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eDNA and technology

Technology is revolutionising the way scientists monitor, research and uncover new information about habitats and species. We are at the forefront of testing the feasibility of new technologies, including eDNA, drones and AI.

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Water quality: catchment to reef

We play a major role in monitoring the condition and tracking long-term trends of water quality entering the Great Barrier Reef. We work closely with cane farmers and graziers to help reduce runoff.

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Coral reef habitats

Our scientists undertake multiple monitoring programs to provide governments, industries and communities with essential data on the condition of coral habitats.

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Fish habitats

We monitor fish habitats and species in both freshwater and marine environments. This research monitors fish populations, tracks invasive fish species and helps understand fish communities.

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We are James Cook University's Centre for Tropical Water and Aquatic Ecosystem Research (TropWATER). We lead influential research on tropical water ecosystems across northern Australia, and beyond, contributing to their sustainable management and global understanding.

About us

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Our services and capabilities

We provide science-based solutions, stakeholder training, and innovative monitoring technologies. Our capabilities include water quality and eDNA labs, specialised training programs, technology development, and a range of environmental assessments and restoration efforts.

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Led by Director Professor Damien Burrows, our centre includes 150 researchers and over 100 post-graduate students. Discover the passionate minds driving innovation in our field.

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