1. Cleguer, C., Garrigue, C., Fuentes, M.M.P.B., Hamann, M., Payri, C., & Marsh, H. (2024) Temporal changes in habitat use for dugongs in a spatially restricted coral reef environment. Pacific Conservation Biology 30, PC23036. doi: 10.1071/PC23036.
  2. Firth, L.B., Bone, J., Bartholomew, A., Bishop, M.J., Bugnot, A., Bulleri, F., Chee, S.Y., Claassens, L., Dafforn, K.A., Fairchild, T.P., Hall, A.E., Hanley, M.E., Komyakova, V., Lemasson, A.J., Loke, L.H.L., Mayer-Pinto, M., Morris, R., Naylor, L., Perkins, M.J., Pioch, S., Porri, F., O’Shaughnessy, K.A., Schaefer, N., Strain, E.A., Toft, J.D., Waltham, N., Aguilera, M., Airoldi, L., Bauer, F., Brooks, P., Burt, J., Clubley, C., Espinosa, J.R.F., Evans, A.J., Farrugia-Drakard, V., Froneman, W., Griffin, J., Hawkins, S.J., Heery, E., Herbert, R.J.H., Jones, E., Leung, K.M.Y., Moore, P., Sempere-Valverde, J., Sengupta, D., Sheaves, M., Swearer, S., Thomson, R.C., Todd, P., Knights, A.M. (2024) Coastal greening of grey infrastructure: An update on the state-of-the-art. ICE Maritime Engineering. doi: 10.1680/jmaen.2023.003.
  3. Morris, R.L., Campbell-Hooper, E., Waters, E., Bishop, M.J., Lovelock, C.E., Lowe, R.J., Strain, E.M.A., Boon, P., Boxshall, A., Browne, N.K., Carley, J.T., Fest, B.J., Fraser, M.W., Ghisalberti, M., Gillanders, B.M., Kendrick, G.A., Konlechner, T.M., Mayer-Pinto, M., Pomeroy, A.W.M., Rogers, A.A., Simpson, V., Van Rooijen, A.A., Waltham, N.J., & Swearer, S.E. (2024) Current extent and future opportunities for living shorelines in Australia. Science of the Total Environment 917, 170363. doi: 10.1016/j.scitotenv.2024.170363.
  4. Shanafield, M., Blanchette, M., Daly, E., Wells, N., Burrows, R.M., Korbel, K., Rau, G.C., Bourke, S., Wakelin-King, G., Holland, A., Ralph, T., McGrath, G., Robson, B., Fowler, K., Andersen, M.S., Yu, S., Jones, C.S., Waltham, N., Banks, E.W., Flatley, A., Leigh, C., Maxwell, S., Siebers, A., Bond, N., Beesley, L., Hose, G., Iles, J., Cartwright, I., Reid, M., de Castro Tayer, R., & Duvert, C. (2024) Australian non-perennial rivers: Global lessons and research opportunities. Journal of Hydrology. doi: 10.1016/j.jhydrol.2024.130939.
  5. Thibault, M., Letourneur, Y., Cleguer, C., Bonneville, C., Briand, M.J., Derville, S., Bustamante, P., & Garrigue, C. (2024) C and N stable isotopes enlighten the trophic behaviour of the dugong (dugong dugon). Scientific Reports 14: 896. doi: 10.1038.s41598-023-50578-3.
  6. Twomey, A.J., Nunez, K., Carr, J.A., Crooks, S., Friess, D.A., Glamore, W., Orr, M., Reef, R., Rogers, K., Waltham, N.J., Lovelock, C.E. (2024) Planning hydrological restoration of coastal wetlands: Key model considerations and solutions. Science of the total Environment 915, 169881. doi: 10.1016/j.scitotenv.2024.169881.


  1. Albright, R., Hansson, L., Cooley, S.R., Gattuso, J., Marshall, P., Marshall, N., Fletcher, S., Haraldsson, G., & Hoegh-Guldberg, O. (2023) Are we ready for ocean acidification? A framework for assessing and advancing policy readiness. Environment Research Letters 18, 041001. doi: 10.1088/1748-9326/acc085.
  2. Ani, C.J., Smithers, S.G., Lewis, S., Baird, M., & Robson, B. (2023) eReefs modelling suggest Trichodesmium may be a major nitrogen source in the Great Barrier Reef. Estuarine, Coastal and Shelf Science 285, 108306. doi: 10.1016/j.ecss.2023.108306.
  3. Bainbridge, Z., Olley, J., Wilkinson, S., Bartley, R., Lewis, S., Dougall, C., Khan, S., Kuhnert, P., & Burton, J. (2023) Refining fine sediment source identification through integration of spatial modelling, concentration monitoring and source tracing: A case study in the Great Barrier Reef catchments. Science of the Total Environment 892, 164731. doi: 10.1016/j.scitotenv.2023.164731.
  4. Binks, O., Cernusak. L.A., Liddell, M., Bradford, M., Coughlin, I., Bryant, C., Palma, A.C., Hoffmann, L., Alam, I., Carle, H.J., Rowland, L., Oliveira, R.S., Laurance, S.G.W., Mencuccini, M., & Meir, P. (2023) Vapour pressure deficit modulates hydraulic function and structure of tropical rainforests under nonlimiting soil water supply. New Phytologist. doi: 10.1111/nph.19257.
  5. Bradley, M., Sheaves, M., & Waltham, N.J. (2023) Urban-industrial seascapes can be abundant and dynamic fish habitat. Frontiers in Marine Science. doi: 10.3389/fmars.2022.1034039.
  6. Bremner, J., Petus, C., Dolphin, T., Hawes, J., Beguet, B., & Devlin, M.J. (2023) A seagrass mapping toolbox for South Pacific environments. Remote Sensing 15, 834. doi: 10.3390/rs15030834.
  7. Bunuel, X., Alcoverro, T., Boada, J., Zinkunegi, L., Smith, T.M., Barrera, A., Casas, M., Farina, S., Perez, M., Romero, J., Arthur, R., & Pages, J.F. (2023) Indirect grazing-induced mechanisms contribute to the resilience of Mediterranean seagrass meadows to sea urchin herbivory. Oikos, e09520. doi: 10.1111/oik.09520.
  8. Cadier, C., Waltham, N.J., Canning. A., Fry, S., & Adame, M.F. (2023) Tidal restoration to reduce greenhouse gas emissions from freshwater impounded coastal wetlands. Restoration Ecology, 1-10. doi: 10.1111/rec.13829/suppinfo.
  9. Canning, A.D., & Death, R.G. (2023) Establishing riverine nutrient criteria using individual taxa thresholds. Water Research 246, 120731. doi: 10.1016/j.watres.2023.120731.
  10. Canning, A.D., Smart, J.C.R., Dyke, J., Curwen, G., Hasan, S., & Waltham, N.J. (2023) Constructed wetlands suitability for sugarcane profitability, freshwater biodiversity and ecosystem services. Environmental Management 71: 304-320. doi: 10.1007/s00267-022-01734-4.
  11. Carter, A.B., Coles, R., Jarvis, J.C., Bryant, C.V., Smith, T.M., & Rasheed, M.A. (2023) A report card approach to describe temporal and spatial trends in parameters for coastal seagrass habitats. Scientific Reports 13:2295. doi: 10.1038/s41598-023-29147-1.
  12. Carter, A., McKenna, S., Rasheed, M.A., Taylor, H., van de Wetering, C., Chartrand, K., Reason, C., Collier, C., Shepherd, L., Mellors, J., McKenzie, L., Duke, N.C., Roelofs, A., Smit, N., Groom, R., Barrett, D., Evans, S., Pitcher, R., Murphy, N., Carlisle, M., David, M., Lui, S, Torres Strait Indigenous Rangers, & Coles, R.G. (2023) Seagrass spatial data synthesis from north-east Australia, Torres Strait and Gulf of Carpentaria, 1983 to 2022. Limnology and Oceanography Letters. doi: 10.1002/lol2.10352.
  13. Cartwright, P., Browne, N., Fearns, P., O’Leary, M., & Lowe, R. (2023) Applying ensemble climate models to predict the fate of marginal coral reefs already existing at thermal and turbidity limits in arid tropical Australia. Climate Resilience and Sustainability 3:e66. doi: 10.1002/cli2.66.
  14. Chung, C.T.Y., Hope, P., Hutley, L.B., Brown, J., & Duke, N.C. (2023) Future climate change will increase risk to mangrove health in Northern Australia. Communications Earth & Environment 4, 192. doi: 10.1038/s43247-023-00852-z.
  15. De Brauwer, M., Clarke, L.J., Chariton, A., Cooper, M.K., de Bruyn, M., Furlan, E., MacDonald, A.J., Rourke, M.L., Sherman, C.D.H., Suter, L., Villacorta-Rath, C., Zaiko, A., & Trujillo-Gonzalez, A. (2023) Best practice guidelines for environmental DNA biomonitoring in Australa and New Zealand. Environmental DNA, 1-7. doi: 10.1002/edn3.395.
  16. Donaldson, J., Maeda, K., Iida, M., Kobayashi, H., Ebner, B.C., & Tran, H.D. (In press) New distributional records of four amphidromous gobies (Gobioidie: Sicydiinae) in continental Vietnam. Cybium 2023: 1-6. doi: 10.26028/cybium-2023-019.
  17. Douglas, S.R.L., Tebbett, S.B., Choukroun, S., Goatley, C.H.R., & Bellwood, D.R., (2023) Depth stratified light trap sampling reveals variation in the depth distribution of late-stage cryptobenthic reef fish larvae. Coral Reefs 42: 507-512. doi: 10.1007/s00338-023-02363-x.
  18. Duarte de Paula Costa, M., Adame, M.F., Bryant, C.V., Hill J., Kelleway, J.J., Lovelock, C.E., Ola, A., Rasheed, M.A., Salinas, C., Serrano, O., Waltham, N., York, P.H., Young, M., & Macreadie, P. (2023) Quantifying blue carbon stocks and the role of protected areas to conserve coastal wetlands. Science of the Total Environment 874, 162518. doi: 10.1016/j.scitotenv.2023.165218.
  19. Ebner, B.C., Maeda, K., Donaldson, J.A., Harasti, D., Lord, C., Hay, V., Heffernan, J., Starrs, D., Thuesen, P., Beatty, S., Boseto, D., Copeland, L.K.F., Rashni, B., Hevalao, R.S., & Keith, P. (In press) Pebbled places preferred by people and pipefish in a World Heritage protected area. Cybium 2023: 1-16. doi: 10.26028.cybium/2023-039.
  20. Garrigue, C., Derville, S., Bonneville, C., Brisset, M., Bustamante, P., Cleguer, C., Clua, E.E.G., Dabin, W., Fiat, S., Justine, J.L., Machful, P., Mai, T., Plichon, P., Portal, A., Sidobre, C., Steel, D., Vivier, J.C., & Vourey, E. (2023) Marine mammal strandings recorded in New Caledonia, South West Pacific Ocean, 1877 to 2022. Pacific Conservation Biology 30, PC23016. doi: 10.1071/PC23016.
  21. Harrison, H.B., Drane, L., Berumen, M.L., Cresswell, B.J., Evans, R.D., Galbraith, G.F., Srinvasan, M., Taylor, B.M., Williamson, D.H., & Jones, G.P. (2023) Ageing of juvenile coral grouper (Plectropomus maculatus) reveals year-round spawning and recruitment: implication for seasonal closures. The Royal Society Publishing, Proceedings B. doi: 10.1098/rspb.2023.0584.
  22. Haydon, T.D., Matthews, J.L., Seymour, J.R., Raina, J.B., Seymour, J.E., Chartrand, K., Camp, E.F., & Suggett, D.J. (2023) Metabolomic signatures of corals thriving across extreme reef habitats reveal strategies of heat stress tolerance. The Royal Society Publishing, Proceedings B. doi: 10.1098/rspb.2022.1877.
  23. Hook, S.E., Smith, R.A., Waltham, N., & Warne, M. St.J. (2023) Pesticides in the Great Barrier Reef catchment area: Plausible risks to fish populations. Integrated Environmental Assessment and Management, 1-24. doi: 10.1002/ieam.4864.
  24. Jahanbakht, M., Azghadi, M.R., & Waltham, N.J. (2023) Semi-supervised and weakly-supervised deep neural networks and dataset for fish detection in turbid underwater videos. Ecological Informatics 78, 102303. doi: 10.1016/j.ecoinf.2023.102303.
  25. Kwong, S.L.T., Villacorta-Rath, C., Pratchett, M., & Uthicke, S. (2023) Telomere dynamics in the Pacific crown-of-thorns seastar (Acanthaster cf. solaris): effect of age, diet, and tissue type. Coral Reefs. doi: 10.1007/s00338.023.02405-4.
  26. Langlois, L.A., Collier, C., & McKenzie, L.J. (2023) Subtidal seagrass detector: development of a deep learning seagrass detection and classification model for seagrass presence and density in diverse habitats from underwater photoquadrats. Frontiers in Marine Science, 10:1197695. doi: 10.3389/fmars.2023.1197695.
  27. Lear, K.O., Ebner, B.C., Fazeldean, T., Whitty, J., & Morgan, D.L. (2023) Inter-decadal variation in diadromous and potamodromous fish assemblages in a near pristine tropical dryland river. Ecology of Freshwater Fish 32: 444-463. doi: 10.1111/eff.12698.
  28. Li, Y., Yu, W., Tian, L., Lewis, S., Yoshimura, K., Wang, C., Cui, Y., Ma, Y., Guo, R., Zhang, J., Jing, Z., Shao, L., Guo, X., & Wang, Y. (2023) Diagnosis of atmospheric circulation shifts in the central Tibetan plateau: Evidence from stable isotopes. Atmospheric Research 282, 106536. doi: 10.1016/j.atmosres.2022.106536.
  29. Malerba, M.E., Duarte de Paula Coasta, M., Friess, D.A., Schuster, L., Young, M.A., Lagomasino, D., Serrano, O., Hickey, S.M., York, P.H., Rasheed, M., Lefcheck, J.S., Radford, B., Atwood, T.B., Ierodiaconou, D., & Macreadie, P. (2023) Remote sensing for cost-effective blue carbon accounting. Earth-Science Reviews 238, 104337. doi: 10.1016/j.earscirev.2023.104337.
  30. Martinez-Baena, F., Raoult, V., Taylor, M.D., Gaston, T.F., McLeod, I., & Bishop, M.J. (2023) Trophic structure of temperate Australian oyster reefs within the estuarine seascape: A stable isotope analysis. Estuaries and Coasts 46, 844-859. doi: 10.1007/s12237-022-01157-8.
  31. McGowan, A.M., Lanyon, J.M., Clark, N., Blair, D., Marsh, H., Wolanski, E., & Seddon, J.M. (2023) Cryptic marine barriers to gene flow in a vulnerable coastal species, the dugong (Dugong dugon). Marine Mammal Science, 1-22. doi: 10.1111.mms.13021.
  32. Moy, K., Schaffer, J., Hammer, M.P., Attard, C.R.M., Beheregaray, L.B., Duncan, R., Lintermans, M., Brown, C., & Unmack, P.J. (2023) Alternative conservation outcomes from aquatic fauna translocations: Losing and saving the Running River rainbowfish. Aquatic Conservation Marine and Freshwater Ecosystems, 1-15. doi: 10.1002/acq.4023.
  33. Oubelkheir, K., Ford, P.W., Cherukuru, N., Clementson, L.A., Petus, C., Devlin, M., Schroeder, T., & Steven, A.D.L. (2023) Impact of a tropical cyclone on terrestrial inputs and bio-optical properties in Princess Charlotte Bay (Great Barrier Reef Lagoon). Remote Sensing 15, 652. doi: 10.3390/rs1503653.
  34. Patricio-Valerio, L., Schroeder, T., Devlin, M.J., Qin, Y., & Smithers, S. (2023) Meteorological satellite observations reveal diurnal exceedance of water quality guideline thresholds in the coastal Great Barrier Reef. (2023) Remote Sensing 15, 2335. doi: 10.3390/rs15092335.
  35. Raoult, V., Pini-Fitzsimmons, J., Smith, T.M., & Gaston, T.F. (2023) Testing non-lethal magnets and electric deterrents on batoids to lower oyster depredation. Regional Studies in Marine Science 61, 102873. doi: 10.1016/j.rsma.2023.102873.
  36. Risandi, J., Rifai, H., Lukman, K.M., Sondak, C.F.A., Hernawan, U.E., Quevedo, J.M.D., Hidayat, R., Ambo-Rappe, R., Lanuru. M., McKenzie, L., Kohsaka, R., & Nadaoka, K. (2023) Hydrodynamics across seagrass meadows and its impacts on Indonesian coastal ecosystems: A review. Frontiers in Earth Science 11: 1034827. doi: 10.3389/feart.2023.1034827.
  37. Ruff, E.O., Alleway, H.K., & Gillies, C.L. (2023) The role of policy in supporting alternative marine farming methods: A case study of seafloor ranching in Australia. Ocean and Coastal Management 240, 106643. doi: 10.1016/j.ocecoaman, 2023.106643.
  38. Sheaves, M., Mattone, C., Barnett, A., Abrantes, K., Bradley, M., Sheaves, A., Sheaves, J., & Waltham, N.J. (2023) Whale sharks as oceanic nurseries for Golden Trevally. CSIRO Publishing. doi: 10.1071/PC23004.
  39. Silburn, D.M., Fillols, E., Rojas-Ponce, S., Lewis, S., & McHugh, A.D. (2023) Direct comparison of runoff of residual and knockdown herbicides in sugarcane using a rainfall simulator finds large difference in runoff losses and toxicity relative to diuron. Science of the Total Environment 863, 160976. doi: 10.1016/j.scitotenv.2022.160976.
  40. Smith, A.K., Cook, N., Grundy, A., Luck, M., Pert, P.L., Picken, F., & Stacey, J. (2023) Innovative local response to cyclone damaged reef leads to rapid tourism recovery. Journal of Ecotourism. doi: 10.1080/14724049.2022.2027952.
  41. Smith, H.A., Fulton, S.E., McLeod, I.M., Page, C.A., & Bourne, D.G. (2023) Sea-weeding: Manual removal of macroalgae facilitates rapid coral recovery. Journal of Applied Ecology 60, 2549-2471. doi: 10.1111/1365-2664.14502.
  42. Tanabe, L.K., Cochran, J.E.M., Williams, C.T., Garzon, F., Langner, U., Hardenstine, R.S., Hawkes, L.A., Brainard, R.E., Eweida, A.A., Marshall, P.A., & Berumen, M.L. (2023) Case report: tracking data from foraging hawksbill turtles in the northern Red Sea. Animal Biotelemetry 11:1. doi: 10.1186/s40317-022-00314-x.
  43. Thiem, J.D., Michie, L.E., Butler, G.L., Ebner, B.C., Sharpe, C.P., Stuart, I., & Townsend, A. (2023) A protected flow breaks the drought for golden perch (Macquaria ambigua) spawning along an extensive semi-arid river system. Ecohydrology, e2576. doi: 10.1002/eco.2576.
  44. Tol, S.J., Carter, A.B., York, P.H., Jarvis, J.C., Grech, A., Congdon, B.C., & Coles, R.G. (2023) Vegetative fragment production as a means of propagule dispersal for tropical seagrass meadows. Marine Environmental Research 191, 106160. doi: 10.1016/j.marenvres.2023.106160.
  45. Villacorta-Rath, C., Lach, L., Andrade-Rodriguez, N., Burrows, D., Gleeson, D., & Trujillo-Gonzalez, A. (2023) Invasive terrestrial invertebrate detection in water and soil using a targeted eDNA approach. NeoBiota 89, 71-89. doi: 10.3897/neobiota.89.98898.
  46. Vulliet, C., Koci, J., Jarihani, B., Sheaves, M., & Waltham, N. (2023) Assessing tidal hydrodynamics in a tropical seascape using structure-from-motion photogrammetry and 2D flow modelling. Estuaries and Coasts. doi: 10.1007/s12237-023-01288-6.
  47. Wallace, B.P., Posnik, Z.A., Hurley, B.J., DiMatteo, A.,D., Bandimere, A., Rodriquez, I., Maxwell, S.M., Meyer, L., Brenner, H., Jensen, M.P., LaCasella, E., Shamblin, B.M., Abreu-Grobois, F.A., Stewart, K.R., Dutton, P.H., Barrios-Garrido, H., Dalleau, M., Dell’amico, F., Eckert, K.L., Fitzsimmons, N.N., Garcia-Cruz,M., Hays, G.C., Kelez, S., Lagueux, C.J., Madden Hoff, C.A., Marco, A., Martins, S.L.T., Mobaraki, A., Mortimer, J.A., Nel, R., Phillott, A.D., Pilcher, N.J., Putman, N.F., Reef, A.F., Rguez-Baren, J.M., Seminoff, J.A., Swaminathan, A., Turkozan, O., Vargas, S.M., Vernet, P.D., Vilaca, S., Whiting, S.C., Hutchinson, B.J., Casale, P., & Mast, R.C. (2023) Marine turtle regional management units 2.0: an updated framework for conservation and research of wide-ranging megafauna species. Endangered Species Research, 52, 209-223. doi: 10.3354/esr01243.
  48. Waltham, N.J., Lovelock, C., & Buelow, C.A. (2023) Blue carbon stocks and cycling in tropical tidal marshes facing grazing pressure. Marine Ecology Progress Series, 717, 1-16. doi: 10.3354.meps14379.
  49. Zhang, J., Yu, W., Lewis, S., Thompson, L.G., Bowen G.J., Yoshimura, K., Cauquoin, A., Werner, M., Chakraborty, S., Jing, Z., Ma, Y., Guo, X., Xu, B., Wu, G., Guo, R., & Qu, D. (2023) Controls on stable water isotopes in monsoonal precipitation across the Bay of Bengal: Atmosphere and Surface Analysis. Geophysical Research Letters. doi: 10.1029/2022GL102229.


  1. Barrios-Garrido, H., Arias-Ortiz, A., Balladares, C., Espinoza-Rodriguez, N., Garcia-Cruz, M., Gonzalez, M.F., Pulido-Petit, G., Rojas-Canzales, D., Rondon-Medicci, M., Vernet, P., & Wildermann, N.E. (2022) Records of Olive Ridley marine turtles (Lepidochelys olivacea Eschscholtz 1829) in Venezuelan waters: A review of historical data sets and threats. Chelonia Conservation and Biology 21(1), 136-140. doi: 10.2744/CCB-1514.1.
  2. Cadier, C., Waltham, N.J., Canning, A., Fry, S., & Adame, M.F. (2022) Tidal restoration to reduce greenhouse gas emissions from freshwater impounded coastal wetlands. Restoration Ecology. doi: 10.1111/rec.13829.
  3. Campbell, C.J., James, C.S., Morris, K.N., Jason, M., Thomas, R.F., Nielsen, D.L., Gehrig, S.L., Palmer, G.J., Wassens, S., Dyer, F., Southwell, M., Watt, R.J., Bond, N.R., & Capon, S.J., (2022) Blue, green and in-between: objectives and approaches for evaluating wetland flow regimes based on vegetation outcomes. Marine and Freshwater Research. doi: 10.1071/MF20338.
  4. Canning, A.D., Smart, J.C.R., Dyke, J., Curwen. C., Hasan, S., & Waltham, N.J. (2022) Constructed wetlands suitability for sugarcane profitability, freshwater biodiversity and ecosystem services. Environmental Management. doi: 10.1007/s00267-022-01734-4.
  5. Carter, A.B., Collier, C., Coles, R., Lawrence, E., & Rasheed, M.A. (2022) Community-specific “desired” states for seagrasses through cycles of loss and recovery. Journal of Environmental Management 314, 115059. doi: 10.1016/j.jenvman.2022.115059.
  6. Castle, A., & Waltham, N. (2022) Clearance rates achieved by an intertidal oyster, Isognomon ephippium, under different tidal emersion and temperature conditions. Estuarine, Coastal and Shelf Science 276, 108018. doi: 10.1016/j.ecss.2022.108018.
  7. Claassens, L., de Villiers, N.M., & Waltham, N.J. (2022) How developed is the South African coast? Baseline extent of South Africa’s coastal and estuarine infrastructure. Ocean and Coastal Management 222, 106112. doi: 10.1016/j.ocecoaman.2022.106112.
  8. Clough, B., Amir, A.A., Chong, V.C., Duke, N.C., Field, C.D., Kjerfve, B., Lee, S.Y., Sasekumar, A., Wong, S.C., Yong, J.W.H., & Gong, W.K., (2022) OBITUARY Dr. Ong Jin Eong (August 28, 1943 – August 5, 2021). Estuarine, Coastal and Shelf Science, 266, 107746. doi: 10.1016/j.ecss.2022.107746.
  9. Cook, N., Smith, A., Songcuan, A., Cassidy, D., Sartori, G., & McLeod, I. (2021) Lessons learned from small-scale coral outplanting intervention at a restoration site on the Great Barrier Reef. Short Report. Ecological Management & Restoration 23(1), 89-93. doi: 10.1111/emr.12547.
  10. Cooper, M.K., Villacorta-Rath, C., Burrows, D., Jerry, D.R., Carr, L., Barnett, A., Huveneers, C., & Simpfendorfer, C.A. (2022) Practical eDNA sampling methods inferred from particle size distribution and comparison of capture techniques for a critically endangered elasmobranch. Environmental DNA, 2022;00:1-13. doi: 10.1002.edn3.279.
  11. Davis, M.T., Canning, A.D., Midwinter, A.C., & Death, R.G. (2022) Nitrate enrichment does not affect enteropathogenic Escherichia coli in aquatic microcosms but may affect other strains present in aquatic habitats. PeerJ 10:e13914. doi: 10.7717/peerj.13914.
  12. Derville, S., Cleguer, C., & Garrique, C. (2022) Ecoregional and temporal dynamics of dugong habitat use in a complex coral reef lagoon ecosystem. Scientific Reports 12, 552. doi: 10.1038/s41598-021-04412-3.
  13. Duarte de Paula Costa, M., Lovelock, C.E., Waltham, N.J., Moritsch, M.M., Butler, D., Power, T., Thomas, E., & Macreadie, P.I. (2022) Modelling blue carbon farming opportunities at different spatial scales. Journal of Environmental Management 301, 113813. doi: 10.1016/jenvman.2021.113813.
  14. Duke, N.C., Mackenzie, J.R., Canning, A., Hutley, L.B., Bourke, A.J., Kovacs, J., Cormier, R., Staben, G., Lymburner, L., & Ai, E. (2022) ENSO-driven extreme oscillations in mean sea level destabilise critical shoreline mangroves – An emerging threat. PLOS Climate, 1-23. doi: 10.1371/journal.pclm.0000037.
  15. Earp, H., Vye, S., Bohn, K., Burrows, M., Chenery, J., Dickens, S., Foster, C., Grist, H., Lamont, P., Long, S., Morrall, Z., Poclington, J., Scott, A., Watson, G., West, V., Jenkins, S., Delany, J., and Sugden, H. (2022) Do you see what I see? Quantifying inter-observer variability in an intertidal marine citizen science experience. Citizen Science: Theory and Practice 7(1):12, 1-13. doi: 10.5334/cstp.483.
  16. Fronkova, L., Greenwood, N., Martinez, R., Graham, J.A., Harrod, R., Graves, C.A., Devlin, M.J., & Petus, C. (2022) Can Forel-Ule Index act as a proxy of water quality in temperate waters? Application of plume mapping in Liverpool Bay, UK. Remote Sensing 14, 2375. doi: 10.3390/rs14102375.
  17. Garrigue, C., Bonneville, C.D., Cleguer, C., & Oremus, M. (2022) Extremely low mtDNA diversity and high genetic differentiation reveal the precarious genetic status of dugongs in New Caledonia, South Pacific. Journal of Heredity 1-9. doi: 10.1093/hered/esac029.
  18. Garzon, F., Williams. C.T., Cochran, J.E.M., Tanabe, L.K., Abdulla, A., Berumen,M.L., Habis, T., Marshall, P.A., Rodrigue, M., & Hawkes, L.,A. (2022) A multi-method characterization of Elasmobranch & Cheloniidae communities of the north-eastern Red Sea and Gulf of Aqaba. PLOS One 17(9), e0275511. doi: 10.1371/journal.pone.0275511.
  19. Gauthey, A., Backes, D., Balland, J., Alam, I., Maher, D.T., Cernusak, L.A., Duke, N.C., Medlyn, B.E., Tissue, D.T., & Choat, B. (2022) The role of hydraulic failure in a massive mangrove die-off event. Frontiers in Plant Science 13, 822136. doi: 10.3389/fpls.2022.833136.
  20. Godfrey, P.C., Pusey, B.J., Pearson, R.G., & Arthington, A.H. (2022) Predictable hydrology, habitat and food resources determine fish recruitment dynamics in an incised tropical Australian river. Ecohydrology, e2457. doi: 10.1002/eco.2457.
  21. Hagger. V., Waltham, N.J., & Lovelock. C.E. (2022) Opportunities for coastal wetland restoration for blue carbon with co-benefits for biodiversity, coastal fisheries, and water quality. Ecosystem Services 55, 101423. doi: 10.1016/j.ecoser.2022.101423.
  22. He, Z., Feng, X., Chen, Q., Li, L., Li, S., Han, K., Guo, Z., Wang, J., Liu, M., Shi, C., Xu, S., Shao, S., Liu, X., Mao, X., Xie., W., Wang, X., Zhang, R., Li, G., Wu, W., Zheng, Z., Zhong, C., Duke, N.C., & Boufford, D.E., Fan, G., Wu, C.I., Ricklefs, R.E., & Shi, S. (2022) Evolution of coastal forests based on a full set of mangrove genomes. Nature Ecology and Evolution 6, 738-749. doi: 10.1038/s41559-022-01744-9.
  23. Iles, J.A., Pettit, N.E., Cawthray, G., & Grierson, P.F. (2022) Chemotaxonomic responses of autotropic periphyton communities to nutrient additions in pools of an intermittent stream. Freshwater Biology 67, 2148-2160. doi: 10.1111.fwb.14002.
  24. Iles, J.A., Pettit, N.E., Donn, M.J., & Grierson, P.F. (2022) Phosphorus sorption characteristics and interactions with leaf litter-derived dissolved organic matter leachate in iron-rich sediments of a sub-tropical ephemeral stream. Aquatic Sciences 84:56, 1-16. doi: 10.1007/s00027-022-00888-x.
  25. Jahanbakht, M., Xiang, W., Waltham, N.J., & Azghadi, M.R. (2022) Distributed deep learning in the cloud and energy-efficient real-time image processing at the edge for fish segmentation in underwater videos. IEEEAccess. doi: 10.1109/ACCESS.2022.3202975.
  26. Jing, Z., Yu, W., Lewis, S., Thompson, L.G., Xu, J., Zhang, J., Xu, B., Wu, G., Ma, Y., Wang, Y., & Guo, R. (2022) Inverse altitude effect disputes the theoretical foundation of stable isotope paleoaltimetry. Nature Communications 13, 4371. doi: 10.1038/s41467-022-32172-9.
  27. Joy, M.K., Rankin, D.A., Wohler, L., Boyce, P., Canning, A., Foote, K.J., & McNie, P.M. (2022) The grey water footprint of milk due to nitrate leaching from dairy farms in Canterbury, New Zealand. Australiaian Journal of Environmental Management 29(2), 177-199. doi: 10.1080/14486563.2022.2068685.
  28. Lloyd-Jones, L.R., Kuhnert, P.M., Lawrence, E., Lewis, S.E., Waterhouse, J., Gruber, R.K., & Kroon, F.J. (2022) Sampling re-design increases power to detect change in the Great Barrier Reef’s inshore water quality. PLoS ONE 17(7), e0271930. doi: 10.1371.journal.pone.0271930.
  29. McDonald, S., Cresswell, T., Hassell, K., & Keough, M. (2022) Experimental design and statistical analysis in aquatic live animal radiotracing studies: A systematic review. Critical Reviews in Environmental Science and Technology, 52(15), 2772-2801. doi: 10.1080/10643389.2021.1899551.
  30. Murray, N.J., Worthington, T.A., Bunting, P., Duce, S., Hagger, V., Lovelock, C.E., Lucas, R., Saunders, M.I., Sheaves, M., Spalding, M., Waltham, N.J., & Lyons, M.B. (2022) High-resolution mapping of losses and gains of Earth’s tidal wetlands. Wetland Ecology 376, 744-749. doi: 10.1126/science.abm9583.
  31. Patricio-Valerio, L., Schroeder, T., Devlin, M.J., Qin, Y., & Smithers, S. (2022) A machine learning algorithm for Himaware-8 total suspended solids retrievals in the Great Barrier Reef. Remote Sensing 14, 3503. doi: 10.3390/rs14143503.
  32. Peinemann, V.N., Pombo-Ayora, L., Cochran, J.E.M., Marchese, F., Chimienti, G., Rodrigue, M., Eweida, A.A., Marshall, P.A., Benzoni, F., & Berumen, M.L. (2022) First record of Boulenger’s anthias Sacura boulengeri (Heemstra 1973) in the Red Sea. Journal of Fish Biology 102, 294-298. doi: 10.1111/jfb.15254.
  33. Petus, C., Waterhouse, J., Tracey, D., Wolanski, E., & Brodie, J. (2022) Using optical water-type classification in data-poor water quality assessment: A case study in the Torres Strait. Remote Sensing 14, 2212. doi: 10.3390/rs14092212.
  34. Rajan, P., Duke, N.C., Mathew, S., & Cherian, E. (2022) Bruguiera x rhynchopetala (Rhizophoraceae) newly reported in India, far west of south-east Asian, east Asian and western Pacific regions. Rheedea 32(2), 109-119. doi: 10.22244/rheedea.2021.32.02.01.
  35. Robson, B.J., Lewis, S., Kroon, F., Fabricius, K., Warne, M., & Wolanski, E. (2022) Jon Brodie memorial: The sources, fates and consequences of pollutants in tropical shelf systems. Marine Pollution Bulletin 179, 113669. doi: 10.1016/j.marpolbul.2022.113669.
  36. Rojas-Canizales, D., Restrepo, J., Mejias-Balsalobre, C., Barrios-Garrido, H., & Valverde, R.A. (2022) Illegal take of nesting sea turtles in Tortuguero, Costa Rica: Conservation, trade, or tradition? Journal of Environmental Management 324, 116408. doi: 10.1016/j.jenvman.2022.116408.
  37. Schlaefer, J., Carter, A., Choukroun, S., Coles, R., Critchell, K., Lambrechts, J., Rasheed, M., Tol, S., & Grech, A. (2022) Marine plant dispersal and connectivity measures differ in their sensitivity to biophysical model parameters. Environmental Modelling and Software 149, 105313. doi: 10.1016/j.envsoft.2022.105313.
  38. Smith, A., Songcuan, A.J., Cook, N., Brown, R., Cook, K., & Richardson, R. (2022) Engineering, ecological and social monitoring of the largest underwater sculpture in the world at John Brewer Reef, Australia. Journal of Marine Science and Engineering 10, 1617. doi: 10.3390/jmse10111617.
  39. Smith, T.M., Sherman, C.D.H., Cumming, E.E., York, P.H., & Jarvis, J.C. (2022) Size matters: Variation in seagrass seed size at local scales affects seed performance. Hydrobiologia 849, 2335-2352. doi: 10.1007/s10750-022-04873-1.
  40. Villacorta-Rath, C., Espinoza, T., Cockayne, B., Schaffer, J., & Burrows, D. (2022) Environmental DNA analysis confirms extant populations of the cryptic Irwin’s turtle within its historical range. BMC Ecology and Evolution, 22:57. doi: 10.1186/s12862-022-02009-6.
  41. Villacorta-Rath, C., Green, B.S., Gardener, C., Murphy, N.P., Souza, C.A., & Strugnell, J.M. (2022) Disentangling genetic from environmental effects on phenotypic variability of southern rock lobster (Jasus edwardsii) postlarvae. Ecology and Evolution, 12:e9519. doi: 10.1002/ece3.9519.
  42. Walker, S.E., Sheaves, M., & Waltham, N.J. (2022) Barriers to using UAVs in conservation and environmental management: A systematic review. Environmental Management. doi: 10.1007/s00267-022-01768-8.
  43. Wallace, J., Bueno, C., & Waltham, N.J. (2022) Modelling the removal of nitrogen and sediment by  a constructed wetland system in north Queensland, Australia. Ecological Engineering 184, 106767. doi: 10.1016/j.ecoleng.2022.106767.
  44. Waltham, N.J., Bradley, M., Wilson, S., Kane, K., Langham, O., Sheaves, M. (2022) Remotely operated vehicle reveals fish orientate to the substrate underneath marine floating pontoons. Estuarine, Coastal and Shelf Science, 108184, doi: 10.1016/j.ecss.2022.108184.
  45. Waltham, N.J., & Connolly, R.M. (2022) Food webs supporting fisheries production in estuaries with expanding coastal urbanisation. Food Webs 33, e00259. doi: 10.1016/j.fooweb.2022.e00259.
  46. Waltham, N.J. Schaffer, J., Walker, S., Perry, J., & Nordberg, E. (2022) Simple fence modification increases land movement prospects for freshwater turtles on floodplains. Wildlife Biology, e01012. doi: 10.1002/wlb3.01012.
  47. Wang, Z-Z., Guo, Z-X., Zhong, C-R., Lyu, H-M., Li, X-N., Duke, N.C., & Shi, S-H. (2022) Genomic variation patterns of subspecies defined by phenotypic criteria: Analyses of the mangrove specia complex, Avicennia marina. Journal of Systematics and Evolution 60(4), 835-847. doi: 10.1111/jse.12709.
  48. Warne, M.St.J., Turner, R.D.R., Davis, A.M., Smith, R., & Huang, A. (2022) Temporal variation of imidacloprid concentration and risk in waterways discharging to the Great Barrier Reef and potential causes. Science of the Total Environment 823, 153556. doi: 10.1016/j.scitotenv.2022.153556.
  49. Wolanski, E., & Hopper, C. (2022) Dams and climate change accelerate channel avulsion and coastal erosion and threaten Ramsar-listed wetlands in the largest Great Barrier Reef watershed. Ecohydrology & Hydrobiology 22, 197-212. doi: 10.1016/j.ecohyd.2022.01.001.


  1. Abhik, S., Hope, P., Hendon, H.H., Hutley, L.B., Johnson, S., Drosdowsky, W., Brown, J.R., & Duke, N.C. (2021) Influence of the 2015-2016 El Nino on the record-breaking mangrove dieback along northern Australia coast. Scientific reports 11, 20411. doi: 10.1038/s41598-021-99313-w.
  2. Adame, M.F., Waltham, N.J., Iram, N., Shahrabi, F., Salinas, C., Burford, M., & Ronan, M. (2021) Denitrification within the sediments and epiphyton of tropical macrophyte stands. Inland Waters 11(3), 257-266. doi: 10.1080.20442041/2021.1902214.
  3. Armitage, C., Auld, T., Bradby, K., Campbell, H., Clarkson, B., Cox, A., Dixon, P., Fitzimmons, J., Foran, B., Howling, G., McLeod, I., Norrish, S., O’Connor, P., O’Gorman, D., Slater, H., & Wrigley, D. (2021) The Darwin agreement: A collaboration between Australian restoration organisations in support of the UN Decade on Ecosystem Restoration. Comment Piece. Ecological Management & Restoration 22, 220-222. doi: 10.1111/emr.12510.
  4. Bahadori, M., Chen, C., Lewis, S., Boyd, S., Rashti, M.R., Esfanbod, M., Garzon-Garcia, A., Van Zwieten, L., & Kuzyakov, Y. (2021) Soil organic matter formation is controlled by the chemistry and bioavailability of organic carbon inputs across different land uses. Science of the Total Environment 770, 145307. doi: 10.1016/j.scitotenv.2021.145307.
  5. Bahadori, M., Wang, J-T., Shen, J., Lewis, S., Rashti M.R., & Chen, C. (2021) Soil organic matter and geochemical characteristics shape microbial community composition and structure across different land uses in an Australian wet tropical catchment. Land Degradation and Development 33(6), 817-831. doi: 10.1002/ldr.4174.
  6. Bainbridge, Z., Lewis, S., Stevens, T., Petus, C., Lazarus, E., Gorman, J., Smithers, S. (2021) Measuring sediment grain size across the catchment to reef continuum: Improved methods and environmental insights. Marine Pollution Bulletin, 168:112339. doi: 10.1016/j.marpolbul.2021.112339.
  7. Barrios-Garrido, H., De Turris-Morales, K., & Espinoza-Rodriguez, N.E. (2021) Guiana Dolphin (Sotalia guianensis) in the Maracaibo Lake System, Venezuela: Conservation, threats and population overview. Frontiers in Marine Science 7, 594021. doi: 10.3389/fmars.2020. 594021.
  8. Bergstrom, D.M., Wienecke, B.C., van den Hoff, J., Hughes, L., Lindenmayer, D.B., Ainsworth, T.D., Baker, C.M., Bland, L., Bowman, D.M.J.S., Brooks, S.T., Canadell, J.G., Constable, A.J., Dafforn, K.A., Depledge, M.H., Dickson, C.R., Duke, N.C., Helmstedt, K.J., Holz, A., Johnson, C.R., McGeoch, M.A., Melbourne‐Thomas, J., Morgain, R., Nicholson, E., Prober, S.M., Raymond, B., Ritchie, E.G., Robinson, S.A., Ruthrof, K.X., Setterfield, S.A., Sgrò, C.M., Stark, J.S., Travers, T., Trebilco, R., Ward, D.F.L., Wardle, G.M., Williams, K.J., Zylstra, P.J. and Shaw, J.D. (2021) Combating ecosystem collapse from the tropics to the Antarctic. Global Change Biology. https://doi.org/10.1111/gcb.15539.
  9. Boyero, L., Lopez-Rojo, N., Perez, J., Tonin, A.M., Correa-Araneda, F., Davis, A., & Pearson, R.G. (2021) Effects of gamma irradiation on instream leaf litter decomposition. Hydrobiologia 848, 5223-5232. doi: 10.1007/s10750-021-04703-w.
  10. Boyero, L., Lopez-Rojo, N., Tonin, A.M., Perez, J., Correa-Arnadeda, F., Pearson, R.G., Bosch, J., Albarino, R.J., Anbalagan, S., Barmuta, L.A., Basaguren, A., Burdon, F.J., Caliman, A., Callisto, M., Calor, A.R., Campbell, I.C., Cardinale, B.J., Casas, J.J., Chara-Serna, A.M., Chauvet, E., Ciapala, S., Colon-Gaud, C., Cornejo, A., Davis, A.M., Degebrodt, M., Dias, E.S., Diaz, M.E., Douglas, M.M., Encalada, A.C., Figueroa, R., Flecker, A.S., Fleituch, T., Garcia, E.C., Garcia, G., Garcia, P.E., Gessner, M.O., Gomez, J.E., Gomez, S., Goncalves Jr, J.F., Graca, M.A.S., Gwinn, D.C., Hall Jr, R.O., Hamada, N., Hui, C., Imazawa, D., Iwata, T., Kariuki, S.K., Landeira-Dabarca, A., Laymon, K., Leal, M., Marchant, R., Martins, R.T., Masese, F.E., Maul, M., McKie, B.G., Medeiros, A.O., M’Erimba, C.M., Middleton, J.A., Monroy, S., Muotka, T., Negishi, J.N., Ramirez, A., Richardson, J.S., Rincon, J., Rubio-Rios, J., dos Santos, G.M., Sarremejane, R., Sheldon, F., Sitati, A., Tenkiano, N.S.D., Tiegs, S.D., Tolod, J.R., Venarsky, M., Watson, A., & Yule, C.M. (2021) Impacts of detritivore diversity loss on instream decomposition are greatest in the tropics. Nature Communications 12, 3700. doi: 10.1038/s41467-021-23930-2.
  11. Boyero, L., Perez, J., Lopez-Rojo, N., Tonin, A.M., Correa-Araneda, F., Pearson, R.G., Bosch, J., Albarina, R.J., Anbalagan, S., Barmuta, L.A., Beesley, L., Burdon, F.J., Caliman, A., Callisto, M., Campbell, I.C., Cardinale, B.J., Casas, J.J., Chara-Serna, A.M., Ciapala, S., Chauvet, E., Colon-Gaud, C., Cornejo, A., Davis, A.M., Degebrodt, M., Dias, E.S., Diaz, M.E., Douglas, M.M., Elosegi, A., Encalada, A.C., de Eyto, E., Figueroa, R., Flecker, A.S., Fleituch, T., Frainer, A., Franca, J.S., Garcia, E.A., Garcia, G., Garcia, P., Gessner, M.O., Giller, P.S., Gomez, J.E., Gomez, S., Goncalves Jr, J.F., Graca, M.A.S., Hall Jr, R.O., Hamada, N., Hepp, L.U., Hui, C., Imazawa, D., Iwata, T., Junior, E.S.A., Kariuki, S., Landeira-Dabarca, A., Leal, M., Lehosmaa, K., M’Erimba, C., Marchant, R., Martins, R.T., Masese, F.O., Camden, M., McKie, B.G., Medeiros, A.O., Middleton, J.A., Muotka, T., Negeshi, J.N., Pozo, J., Ramirez, A., Rezenda, R.S., Richardson, J.S., Rincon, J., Rubio-Rios, J., Serrano, C., Shaffer, A.R., Sheldon, F., Swan, C.M., Tenkiano, N.S.D., Tiegs, S.D., Tolod, J.R., Vernasky, M., Watson, A., Yegon, M.J., & Yule, C.M. (2021) Latitude dictates plant diversity effects on instream decomposition. Science Advances 7, eabe7860. doi: 10.1126/sciadv.abe7860.
  12. Budd, A.M., Cooper, M.K., Le Port, A.,Schils, T., Mills, M.S., Deinhart, M.E., and Strugnell, J.M. (2021) First detection of critically endangered scalloped hammerhead sharks (Sphyrna lewini) in Guam, Micronesia, in five decades using environmental DNA. Ecological Indicators. https://doi.org/10.1016/j.ecolind.2021.107649.
  13. Campbell, C.J., James, C.S., Morris, K., Nicol, J.M., Thomas, R.F., Nielsen, D.L., Gehrig, S.L., Palmer, G.J., Wassens, S., Dyer, F., Southwell, M., Watts, R.J., Bond, N.R., & Capon, S.J. (2021) Blue, green and in-between: objectives and approaches for evaluating wetland flow regimes based on vegetation outcomes. Marine and Freshwater Research. doi: 10.1071/MF20338.
  14. Canning, A.D., Death, R.G., & Waltham, N.J., (2021) Pharmaceutical companies should pay for raiding nature’s medicine cabinet. The Lancet, 398(10303), 84-841. doi: 10.1016/S0140-6736(21)01686-X.
  15. Canning, A.D., Jarvis, D., Costanza, R., Hasan, S., Smart, J.C.R., Finisdore, J., Lovelock, C.E., Greenhalgh, S., Marr, H.M., Beck, M.W., Gillies, C.L. & Waltham, N.J. (2021) Financial incentives for large-scale wetland restoration: Beyond markets to common asset trusts. One Earth 4, Issue 7. doi: 10.1016/j.oneear.2021.06.006.
  16. Canning, A. D., Joy, M. K., & Death, R. G. (2021) Nutrient criteria to achieve New Zealand’s riverine macroinvertebrate targets. PeerJ, 9, e11556. https://doi.org/10.7717/peerj.11556.
  17. Canning, A.D., Waltham, N.J. (2021) Ecological impact assessment of climate change and habitat loss on wetland vertebrate assemblages of the Great Barrier Reef catchment and the influence of survey bias. Ecology and Evolution, 00:1–11. https://doi.org/10.1002/ece3.7412.
  18. Canto, M.M., Fabricius, K.E., Logan, M., Lewis, S., McKinna, L.I.W., & Robson, B.J. (2021) A benthic light index of water quality in the Great Barrier Reef, Australia. Marine Pollution Bulletin 169, 112539. doi: 10.1016/j.marpolbul.2021.112539.
  19. Carter, A.B., Collier, C., Lawrence, E., Rasheed, M.A., Robson, B.J., & Coles, R. (2021) A spatial analysis of seagrass habitat and community diversity in the Great Barrier Reef World Heritage Area. Scientific Reports 11:22344. doi: 10.1038/s41598-021-01471-4.
  20. Carter, A.B., McKenna, S.A., Rasheed, M.A., Collier, C., McKenzie, L., Pitcher, R., & Coles, R. (2021) Synthesizing 35 years of seagrass spatial data from the Great Barrier Reef World Heritage Area, Queensland, Australia. Limnology and Oceanography Letters 6, 216-226. doi: 10.1002/lol2.10193.
  21. Chilton, D., Hamilton, D., Nagelkerken, I., Cook, P., Hipsey, M.R., Reid, R., Sheaves, M., Waltham,, N.J., & Brookes, J.D. (2021) Environmental flow requirements of estuaries: providing resilience to current and future climate and direct anthropogenic changes. Frontiers in Environmental Science. doi: 10/3389/fenvs.2021.764218.
  22. Cleguer, C., Kelly, N., Tyne, J., Wieser, M., Peel, D., & Hodgson, A. (2021) A novel method for using small unoccupied aerial vehicles to survey wildlife species and model their density distribution.  Frontiers in Marine Science 8, 640338. doi: 10.3389/fmars.2021.640338.
  23. Colombano, D.D., S.Y. Litvin, S.L. Ziegler, S.B. Alford, R. Baker, M.A. Barbeau, J. Cebrian, R.M. Connolly, L.A. Deegan, J.S. Lesser, C.L. Martin, A.E. McDonald, C. McLuckie, B. Morrison, J.W. Pahl, L.M. Risse, J.A.M. Smith, L.W. Staver, R.E. Turner, and N.J. Waltham. (2021) Climate change implications for tidal marshes and food web linkages to estuarine and coastal nekton. Estuaries and Coasts. https://doi.org/10.1007/s12237-020-00891-1.
  24. Comeros-Raynal, M.T., Brodie, J., Bainbridge, Z., Choat, J.H., Curtis, M., Lewis, S., Stevens, T., Shuler, C.K., Sudek, M., & Hoey, A.S. (2021) Catchment to sea connection: Impacts of terrestrial run-off on benthic ecosystems in American Samoa. Marine Pollution Bulletin 169, 112530. doi: 10.1016/j.marpolbul.2021.112530.
  25. Cooper, M.K., Huerlimann, R., Edmunds, R.C., Budd, A.M., Le Port, A., Kyne, P.M., Jerry, D.R., and Simpfendorfer, C.A. (2021) Improved detection sensitivity using an optimal eDNA preservation and extraction workflow and its application to threatened sawfishes. Aquatic Conservation Marine and Freshwater Ecosystems, 2021: 1– 18. https://doi.org/10.1002/aqc.3591.
  26. Cornet, V.J., & Joyce, K.E. (2021) Assessing the potential of remotely-sensed drone spectroscopy to determine live coral cover on Heron Reef. Drones 5, 29. doi: 10.3390/drones5020029.
  27. Creighton, C., Waterhouse, J., Day, J.C., & Brodie, J. (2021) Criteria for effective regional scale catchment to reef management: A case study of Australia’s Great Barrier Reef. Marine Pollution Bulletin 173, 112882. doi: 10.1016/j.marpolbul.2021.112882.
  28. Dalby, O., Shinha, I., Unsworth, R.K.F., McKenzie, L.J., Jones, B.L., & Cullen-Unsworth, L.C. (2021) Citizen science driven big data collection requires improved and inclusive societal engagement.  Frontiers in Marine Science 8, 610397. doi: 10.3389.fmars.2021.610297.
  29. Devlin, M.J., Lyons, B.P., Johnson, J.E., & Hill, J.M. (2021) The tropical Pacific oceanscape: Current issues, solutions and future possibilities. Marine Pollution Bulletin 166, 112181. doi: 10.1016/j.marpolbul.2021.112181.
  30. Dierssen, H.M., Ackleson, S.G., Joyce, K.E., Hestir, E.L., Castagna, A., Lavender, S., & McManus, M.A. (2021) Living up to the hype of hyperspectral aquatic remote sensing: Science, Resources and Outlook. Frontiers in Environmental Science 9, 649528. doi: 10.3389/fenvs.2021.649528.
  31. Duarte de Paula Costa, M., Lovelock, C.E., Waltham, N.J., Young, M., Adame, M.F., Bryant, C.V., Butler, D., Green, D., Rasheed, M.A., Salinas, C., Serrano, O., York, P.H., Whitt, A.A., & Macreadie, P.I. (2021) Current and future carbon stocks in coastal wetlands within the Great Barrier Reef catchments. Global Change Biology 27(14), 3257-3271. doi: 10.1111/gcb.15642.
  32. Dubuc, A., Collins, G.M., Coleman, L,. Waltham, N.J., Rummer, J.L., & Sheaves, M. (2021) Association between physiological performance and short temporal changes in habitat utilisation modulated by environmental factors. Marine Environmental Research 170, 105448. doi: 10.1016/j.marenvres.2021.105448.
  33. Duarte de Paula Costa, M., Lovelock, C.E., Waltham, N.J., Young, M., Adame, M.F., Bryant, C.V., Butler, D., Green, D., Rasheed, M., Salinas, C., Serrano, O., York. P., Whitt, A.A., and Macreadie, P.I. (2021) Current and future carbon stocks in coastal wetlands within the Great Barrier Reef catchments. Global Change Biology, 27:3257–3271. https://doi.org/10.1111/gcb.15642.
  34. Ebner, B.C. (2021) Yellowfin bream, Acanthopagrus australis, reorientate individual shells in search of prey. Food Webs 29, e00216. doi: 10.1016/j.fooweb.2021.e00216.
  35. Ebner, B.C., Donaldson, J.A., Marshall, J., Starrs, D., & Freeman, A.B. (2021) Diving beetles strip eel to the bone. Good Webs 27 (2021). doi: 10.1016/j.fooweb.2021.e00188.
  36. Ebner, B.C., Donaldson, J.A., Murphy, H., Thuesen, P., Ford, A., Schaffer, J., & Keith, P. (2021) Waterfalls mediate the longitudinal distribution of diadromous predators structuring communities in tropical, short-steep-coastal-stream. Freshwater Biology 66, 1225-1241. doi: 10.1111/fwb.13712.
  37. Elisa, M., Kihwele, E., Wolanski, E., Birkett, C. (2021) Managing wetlands to solve the water crisis in the Katuma River ecosystem, Tanzania. Ecohydrology and Hydrobiology. https://doi.org/10.1016/j.ecohyd.2021.02.001.
  38. Espinoza-Rodriguez, N., & Barrios-Garrido, H. (2021) Fibropapilomatosis in immature green turtles (Chelonia mydas) from the Gulf of Venezuela. Biblioteca Digital Repositorio Academico, Vol. 32. doi: 10.52973/rcfcv.e32086.
  39. Espinoza-Rodriguez, N., & Barrios-Garrido, H. (2021) First report of a humpback whale Megaptera novaeangliae (Borowski, 1781) (Cetartiodactyla: Balaenopteridae) stranding in the Gulf of Venezuela. Ecotropicos, 33. doi: 10.53157/ecotropicos.22e0018.
  40. Espinoza-Rodriguez, N., Pernia, Y., Severeyn, H., de Severeyn Y.G., & Barrios-Garrido, H. (2021) Echinoderms from the Gulf of Venezuela, north-western coast of Venezuela. Papeis Avulsos de Zoologia 61, e20216151. doi: 10.11606/1807-0205/2021.61.51.
  41. Fielke, S.J., Taylor, B.M., Jaaku, E., Mooij, M., Stitzlein, C., Fleming, A., Thorburn, P.J., Webster, A., Davis, A., & Vilas, M.P. (2021) Grasping at digitalisation: turning imagination into fact in the sugarcane farming community. Sustainability Science 16, 677-690. doi: 10.1007/s11625-020-00885-9.
  42. Garzon-Garcia, A., Burton, J.M., Lewis, S., Bainbridge, Z., De Hayr, R., Moody, P., & Brodie, J. (2021) The bioavailability of nitrogen associated with sediment in riverine plumes of the Great Barrier Reef.  Marine Pollution Bulletin 173, 112910. doi: 10.1016/j.marpolbul.2021.112910.
  43. Gilby, B.L., Weinstein, M.P. Baker, R., Cebrian, J., Alford, S.B., Chelsky, A., Colombano, D., Connolly, R.D., Currin, C.A., Feller, I.C., Frank, A., Goeke, J.A., Goodridge Gaines, L.A., Hardcastle, F.E., Henderson, C.J., Martin, C.W., McDonald, A.E., Morrison, B.H., Olds, A.D., Rehage, J.S., Waltham, N.J., & Ziegler, S.L. (2021) Human actions alter tidal marsh seascapes and the provision of ecosystem services. Estuaries and Coasts 44, 1628-1636. doi: 10.1007/s12237-020-00830-0.
  44. Godfrey, P.C., Pearson, R.G., Pusey, B.J., & Arthington, A.H. (2021) Drivers of zooplankton dynamics in a small tropical lowland river. CSIRO Publishing 72, 173-185. doi: 10.1071/MF20067.
  45. Gouezo, M., Wolanski, E., Critchell, K., Fabricius, K., Harrison, P., Golbuu, Y., Doropoulos, C. (2021) Modelled larval supply predicts coral population recovery potential following disturbance. Marine Ecology Progress Series 661:127-145. https://doi.org/10.3354/meps13608.
  46. Hardesty, B.D., Roman, L., Duke, N.C., Mackenzie, J.R., & Wilcox, C. Abandoned, lost and discarded fishing gear “ghost nets” are increasing through time in Northern Australia. Marine Pollution Bulletin 173, 112959. doi: 10.1016/j.marpolbul.2021.112959.
  47. Hein, M.Y., Vardi, T., Shaver, E.C., Pioch, S., Bostrom-Einarsson, L., Ahmed, M., Grimsditch, G., & McLeod, I.M. (2021) Perspectives on the use of coral reef restoration as a strategy to support and improve reef ecosystem services. Frontiers in Marine Science 8(618303). doi: 10.3389/fmars.2021.618303.
  48. Hewitt, D.E., Taylor, M.D., Raoult, V., Smith, T.M., & Gaston, T.F. (2021) Diet-tissue discrimination and turnover of δ13C and δ15N in muscle tissue of a penaeid prawn. Rapid Communications in Mass Spectrometry 35:e9167. doi: 10.1002/rcm.9167.
  49. Jackson, E.L., Smith, T.M., York, P.H., Nielsen, J., Irving, A.D., & Sherman, C.D.H. (2021) An assessment of the seascape genetic structure and hydrodynamic connectivity for subtropical seagrass restoration. Restoration Ecology 29:e13269. doi: 10.1111/rec.13269.
  50. Jing, Z., Yu, W., Schneider, A., Borsdorff, T., Landgraf, J., Lewis, S., Zhang, J., Tang, W., Ma, Y., Xu, B., & Qu, D. (2021) Interannual variation in stable isotopes in water vapor over the Northern Tibetan Plateau linked to ENSO. Geophysical Research Letters. doi: 10.1029/2021GL092708.
  51. Joy, M.K., & Canning, A.D. (2021) Shifting baselines and political expediency in New Zealand’s freshwater management. Marine and Freshwater Research, 72, 456-461. doi: 10.1071/MF20210.
  52. Joyce, K.E., Anderson, K., Bartolo, R.E. (2021) Of Course We Fly Unmanned—We’re Women! Drones, 5(1):21. https://doi.org/10.3390/drones5010021.
  53. Karim, F., Wallace, J., Abbott, B.N., Nicholas, M., & Waltham, N.J. (2021) Modelling the removal of an earth bund to maximise seawater ingress into a coastal wetland. Estuarine, Coast and Shelf Science 263, 107626. doi: 10.1016/j.ecss.2021.107626.
  54. Kihwele, E.S., Veldhuis, M.P., Loishooki, A., Hongoa, J.R., Hopcraft, J.G.C., Olff, H., & Wolanski, E. (2021) Upstream land-use negatively affects river flow dynamics in the Serengeti National Park. Ecohydrology & Hydrobiology. doi: 10.1016/j.ecohyd.2020.12.004.
  55. Kimball, M.E., Connolly, R.M., Alford, S.B., Colombano, D.D., James, W.R., Kenworthy, M.D., Norris, G.S., Ollerhead, J., Ramsden, S., Rehage, J.S., Sparks, E.L., Waltham, N. J., Worthington, T. A., Taylor, M. D. (2021) Novel Applications of Technology for Advancing Tidal Marsh Ecology. Estuaries and Coasts 1-11, 1568-1578. doi: 10.1007/s12237-021-00939-w.
  56. Kwong, S.L.T., Villacorta-Rath, C., Doyle, J. and Uthicke, S. (2021) Quantifying shedding and degradation rates of environmental DNA (eDNA) from Pacific crown-of-thorns seastar (Acanthaster cf. solaris). Marine Biology, 168: 85. https://doi.org/10.1007/s00227-021-03896-x.
  57. Lambert V., Bainbridge, Z.T., Collier, C., Lewis, S.E., Adams, M.P., Carter, A., Saunders, M.I., Brodie, J., Turner, R.D.R., Rasheed, M.A., & O’Brien, K.R. (2021) Connecting targets for catchment sediment loads to ecological outcomes for seagrass using multiple lines of evidence.  Marine Pollution Bulletin 169, 112494. doi: 10.1016/j.marpolbul.2021.112494.
  58. Lewis, S.E., Bartley, R., Wilkinson, S.N., Bainbridge, Z.T., Henderson, A.E., James, C.S., Irvine, S.A., & Brodie, J.E. (2021) Land use change in the river basins of the Great Barrier Reef, 1860 to 2019: A foundation for understanding environmental history across the catchment to reef continuum. Marine Pollution Bulletin 166, 112193. doi: 10.1016/j.marpolbul.2021.113193.
  59. Li, J.Y.Q., Duce, S., Joyce, K.E., & Xiang, W. (2021) See Cucumbers: Using deep learning and drone imagery to detect sea cucumbers on coral reef flats. Drones 5, 28. doi: 10.3390/drones5020028.
  60. McDonald, S., Hassell, K., & Cresswell, T. (2021) Effect of short-term dietary exposure on metal assimilation and metallothionein induction in the estuarine fish Pseudogobuis sp. Science of the Total Environment 772, 145042. doi: 10.1016/j.scitotenv.2021.145042.
  61. Mejias-Balsalobre, C., Restrepo, J., Borges, G., Garcia, R., Rojas-Canizales, D., Barrios-Garrido, H., & Valverde, R.A. (2021) Local community perception of sea turtle egg use in Tortuguero, Costa Rica. Ocean and Coastal Management 201, 105423. doi: 10.1016/j.ocecoaman.2020.107423.
  62. Mnaya, B., Elisa, M., Kihwele, E., Kiwango, H., Kiwango, Y., Ng’umbi, G., Wolanski, E. (2021) Are Tanzanian National Parks affected by the water crisis? Findings and ecohydrology solutions. Ecohydrology & Hydrobiology, https://doi.org/10.1016/j.ecohyd.2021.04.003.
  63. Morgan, D.L., Lear, K.O., Ebner, B.C., & Beatty, S.J. (2021) Net design for selective control of the “plague minnow” Gambusia holbrooki that minimises impact on native Australian fishes. Journal of Fish Biology 99, 2060-2065. doi: 10.1111.jfb.14895.
  64. Oleksyn, S., Tosetto, L., Raoult, V., Joyce, K.E., Williamson, J.E. (2021) Going Batty: The Challenges and Opportunities of Using Drones to Monitor the Behaviour and Habitat Use of Rays. Drones, 5(1):12. https://doi.org/10.3390/drones5010012.
  65. Pearson, R.G., Connolly, N.M., Davis, A.M., & Brodie, J.E. (2021) Fresh waters and estuaries of the Great Barrier Reef catchment: Effects and management of anthropogenic disturbance on biodiversity, ecology and connectivity. Marine Pollution Bulletin 166, 112194. doi: 10.1016/j.marpolbul.2021.112194.
  66. Pearson, R.M., Collier, C.J., Brown, C.J., Rasheed, M.A., Bourner, J., Turschwell, M.P., Sievers, M., & Connolly, R.M. (2021) Remote estimation of aquatic light environments using machine learning: A new management tool for submerged aquatic vegetation. Science of the Total Environment 782, 146886. doi: 10/1016/j.scitotenv.2021.146886.
  67. Rodellas, V., Stieglitz, T.C., Tamborski, J.J., van Beek, P., Andrisoa, A., & Cook, P.G. (2021) Conceptual uncertainties in groundwater and porewater fluxes estimated by radon and radium mass balances. Limnology and Oceanography 66, 1237-1255. doi: 10.1002/lno.11678.
  68. Rojas-Canizales, D., Espinoza-Rodriguez, N., Rodriguez, M.A., Palmar, J., Montiel-Villalobos, M.G., Wildermann, N.E., & Barrios-Garrido, H. (2021) Leatherback turtles (Dermochelys coriacea) in the Gulf of Venezuela: an updated stranding assessment 2001-2014. Marine and Fishery Sciences 34(1), 113-119. doi: 10.47193/mafix.3412021010305.
  69. Saha, N., Webb, G.E., Zhao, J-X., Lewis, S.E., Nguyen, A.D., & Feng, Y. (2021) Spatiotemporal variation of rare earth elements from river to reef continuum aids monitoring of terrigenous sources in the Great Barrier Reef.  Geochimica et Cosmochimica Acta 299, 85-112. doi: 10.1016/j.gca.2021.02.014.
  70. Schlaefer, J.A., Wolanski. E., Lambrechts, J., Kingsford, M.J. (2021) Behavioural and oceanographic isolation of an island-based jellyfish (Copula sivickisi, Class Cubozoa) population. Scientific Reports, 11:10280. https://doi.org/10.1038/s41598-021-89755-7
  71. Scott, A.L., York, P.H., & Rasheed, M.A. (2021) Herbivory has a major influence on structure and condition of a Great Barrier Reef subtropical seagrass meadow. Estuaries and Coast, 44: 506-521. doi: 10.1007/s12237-020-00868-0.
  72. Scott, A.L., York, P.H., & Rasheed, M.A. (2021) Spatial and temporal patterns in macroherbivore grazing in a multi-species tropical seagrass meadow of the Great Barrier Reef. Diversity 13:12. doi: 10.3390/d13010012.
  73. Sheaves, M., Mattone, C., Connolly, R.M., Hernandez, S., Nagelkerken, I., Murray, N., Ronan, M., Waltham, N.J., & Bradley, M. (2021) Ecological constraint mapping: Understanding outcome-limiting bottlenecks for improved environmental decision-making in marine and coastal environments. Frontiers in Marine Science 8, 717448. doi: 10.3389/fmars.2021.717448.
  74. Sheaves, M., Waltham, N.J., Benham, C., Bradley, M., Mattone, C., Diedrich, A., Sheaves, J., Sheaves, A., Hernandez, S., Dale, P., Banhalmi-Zakar, Z., & Newlands, M. (2021) Restoration of marine ecosystems: Understanding possible futures for optimal outcomes. Science of the Total Environment 796, 148845. doi: 10.1016/j.scitotenv.2021.148845.
  75. Shumway, N., Bell-James, J., Fitzsimons, J.A., Foster, R., Gillies, C., & Lovelock, C.E. (2021) Policy solutions to facilitate restoration in coastal marine environments. Marine Policy 134, 104789. doi: 10.1016/j.marpol.2021.104789.
  76. Sinclair, E.A., Sherman, C.D.H., Statton, J., Copeland, C., Matthews, A., Waycott, M., van Dijk, K.‐J., Vergés, A., Kajlich, L., McLeod, I.M. and Kendrick, G.A. (2021) Advances in approaches to seagrass restoration in Australia. Ecological Management and Restoration, 22: 10-21. https://doi.org/10.1111/emr.12452.
  77. Smith, H.A., Brown, D.A., Arjunwadkar, C.V., Fulton, S.E., Whitman, T., Hermanto, B., Mastroianni, E., Mattocks, N., Smith, A.K., Harrison, P.L., Bostrom-Einarsson, LK. McLeod, I.M., & Bourne, D.G. (2021) Removal of macroalgae from degraded reefs enhances coral recruitment. Restoration Ecology. doi: 10.111/rec.13624.
  78. Smith, A., Cook, N., Cook, K., Brown, R., Woodgett, R., Veron, J., & Saylor, V. (2021) Field measurements of a massive Porites coral of Goolboodi (Orpheus Island), Great Barrier Reef. Scientific Reports 11, 15334. doi: 10.1038/s41598-021-94818.w.
  79. Templeman, M.A., McKenzie, M.R., & Kingsford, M.J. (2021) The utility of jellyfish as marine biomonitors. Marine Pollution Bulletin 173, 113056. doi: 10.1016/j.marpolbul.2021.113056.
  80. Thiault, L., Jupiter, S.D., Johnson, J.E., Cinner, J.E., Jarvis, R.M., Heron, S.F., Maina, J.M., Marshall, N.A., Marshall, P.A., & Claudet, J. (2021) Harnessing the potential of vulnerability assessments for managing social-ecological systems. Ecology and Society 26(2). doi: 10.5751/ES-12167-260201.
  81. Tol, S.J., Harrison, M., Groom, R., Gilbert, J., Blair, D., Coles, R., & Congdon, B.C. (2021) Using DNA to distinguish between faeces of Dugong dugon and Chelonia mydas: non-invasive sampling for IUCN-listed marine megafauna. Conservation Genetics Resources. doi: 10.1007/s12686-020-01187-z.
  82. Tol, S.J., Jarvis, J.C., York, P.H., Congdon, B.C., & Coles, R.G. (2021) Mutualistic relationships in marine angiosperms: Enhanced germination of seeds by mega-herbivores. Biotropica 53, 1535-1545. doi: 10.1111/btp.13001.
  83. Trevathan-Tackett, S.M., Kepfer-Rojas, S., Engelen, A.H., York, P.H., Ola, A., Li, J., Kelleway, J.J., Jinks, K.I., Jackson, E.L., Adame, M.F., Pendall, E., Lovelock, C.E., Connolly, R.M., Watson, A., Visby, I., Trethowan, A., Taylor, B., Roberts, T.N.B., Petch, J., Farrington, L., Djukic, I., & Macreadie, P.I. (2021) Ecosystem type drives tea litter decomposition and associated prokaryotic microbiome communities in freshwater and coastal wetlands at a continental scale. Science of the Total Environment 782, 146819. doi: 10.1016/j.scitotenv.2021.146819.
  84. Trujillo-González, A., Villacorta-Rath, C., White, N. E., Furlan, E. M., Sykes, M., Grossel, G., Divi, U., & Gleeson, D. (2021) Considerations for future environmental DNA accreditation and proficiency testing schemes. Environmental DNA, 00, 1– 10. https://doi.org/10.1002/edn3.243.
  85. Turschwell, M.P., Connolly, R.M., Dunic, J.C., Sievers, M., Buelow, C.A., Pearson, R.M., Tulloch, V.J.D., Cote, I.M., Unsworth, R.K.F., Collier, C.J., & Brown C.J. (2021) Anthropogenic pressures and life history predict trajectories of seagrass meadow extent at a global scale. PNAS 118(45) e2110802118. doi: 10/1073/pnas.2110802119.
  86. Vardi, T., Hoot, W.C., Levy, J., Shaver, E., Winters, R.S., Banaszak, A.T., Baums, I.B., Chamberland, V.F., Cook, N., Gulko, D., Hein, M.Y., Kaufman, L., Loewe, M., Lundgren, P., Lustic, C., MacGowan, P., Matz, M.V., McGonigle, M. McLeod, I., Moore, J., Moore, T., Pivard, S., Pollock, F.J., Rinkevich, B., Suggett, D.J., Suleiman, S., Viehman, T.S., Villalobos, T., Weis, V.M., Wolke, C., & Montoya-Maya, P.H. (2021) Six priorities to advance the science and practice of coral reef restoration worldwide. Restoration Ecology 29(8), e13498. doi: 10.1111/rec.13498.
  87. Villacorta-Rath, C., Hoskin, C.J., Strugness, J.M., & Burrows, D. (2021) Long distance (greater than 20km) downstream detection of endangered stream frogs suggests an important role for eDNA in suveying for remnant amphibian populations. PeerJ 12013. doi: 10.7717/peerj.12013.
  88. Wallace, J., & Waltham, N.J. (2021) On the potential for improving water quality entering the Great Barrier Reef lagoon using constructed wetlands. Marine Pollution Bulletin 170, 112627. doi: 10.1016/j.marpolbul,2021.112627.
  89. Waltham, N.J., Alcott, C., Barbeau, M.A., Cebrian, J., Connolly, R.M., Deegan, L.A., Dodds, K., Goodridge Gaines, L.A.. Gilby, B.L., Henderson, C.J., McLuckie, C.M., Minello, T.J., Norris, G.S., Ollerhead, J., Pahl, J., Reinhardt, J.F., Rezek, R.J., Simenstad, C.A., Smith, J.A.M., Sparks, E.L., Staver, L.W.,  Ziegler, S.L.,  Weinstein, M.P. (2021) Tidal marsh restoration optimism in a changing climate and urbanizing seascape. Estuaries and Coasts 44, 1681-1690. doi 10.1007/s12237-020-00875-1.
  90. Waltham, N., & Schaffer, J. (2021) Managing feral pig threats on a tropical floodplain or fisheries values. Authorea. doi: 10.22541/au.161169333.39835067/v1.
  91. Waltham, N.J., & Schaffer, J. (2021) Will fencing floodplain and riverine wetlands from feral pig damage conserve fish community values? Ecology and Evolution 11(20), 13780-13792. doi: 10.1002/ece3.8054.
  92. Waltham, N.J., Wegscheidl, C., Volders, A., Smart, J.C., Hasan, S., Lédée, E. and Waterhouse, J. ( 2021) Land use conversion to improve water quality in high DIN risk, low-lying sugarcane areas of the Great Barrier Reef catchments. Marine Pollution Bulletin, 167: 112373.
  93. Wang, Z.Z., Guo Z.X., Zhong, C.R., Lyu, H.M., Li, X.N., Duke, N.C., & Shi S.H. (2021) Genomic variation patterns of subspecies defined by phenotypic criteria: Analyses of the mangrove species complex, Avicennia marina. Journal of Systematics and Evolution, 1-13. doi: 10.1111/jse.12709.
  94. Williamson, J.E., Duce, S., Joyce, K.E. et al. (2021) Putting sea cucumbers on the map: projected holothurian bioturbation rates on a coral reef scale. Coral Reefs. https://doi.org/10.1007/s00338-021-02057-2.
  95. Wolanski, E. (2021) Threats to Biodiversity in Australia’s Burdekin River Basin. Biodiversity Online J.1(3). BOJ.000513.2021
  96. Wolanski, E., Petus, C., Lambrechts, J., Brodie, J., Waterhouse, J., Tracey, D. (2021) The intrusion of polluted Fly River mud into Torres Strait. Marine Pollution Bulletin 166. https://doi.org/10.1016/j.marpolbul.2021.112243.
  97. Wolanski, E., Richmond, R.H., and Golbuu, Y. (2021) Oceanographic chaos and its role in larval self-recruitment and connectivity among fish populations in Micronesia. Estuarine, Coastal and Shelf Science, 259: 107461.
  98. Younes, N., Joyce, K.E., & Maier, S.W. (2021) All models of satellite-derived phenology are wrong, but some are useful: A case study from northern Australia. International Journal of Applied Earth Observations and Geoinformation 97, 102285. doi: 10.1016/j.jag.2020.102285.
  99. Zhang, R., Guo, Z., Fang, L., Zhong, C., Duke, N.C., & Shi, S. (2021) Population subdivision promoted by a sea-level-change-driven bottleneck: A glimpse from the evolutionary history of the mangrove plant Aegiceras corniculatum. Molecular Ecology, 31, 780-797. doi: 10.1111/mec.16290.
  100. Zhang, J., Yu, W., Jing, Z., Lewis, S., Xu, B., Ma, Y., Wei, F., Luo, L., & Dongmei, Q. (2021) Coupled effects of moisture transport pathway and convection on stable isotopes in precipitation across the East Asian monsoon region: Implications for paleoclimate reconstruction. American Meterological Society, Journal of Climate. doi: 10.1175/JCLI-D-21.1.
  101. Ziegler, S.L., R. Baker, S.C. Crosby, D.D. Colombano, M.A. Barbeau, J. Cebrian, D. Mallick, C.W. Martin, J.A. Nelson, J.F. Reinhardt, C. Simenstad, N.J. Waltham, T.A. Worthington, and L.P. Rozas. (2021) Geographic variation in salt marsh structure and function for nekton: a guide to finding commonality across multiple scales. Estuaries and Coasts.


  1. Abbott, B.N., Wallace, J., Nicholas, D.M., Karim, F., & Waltham, N. (2020) Bund removal to re-establish tidal flow, remove aquatic weeds and restore coastal wetland services – North Queensland, Australia. PlosONE. doi: 10.1371/journal.pone.0217531.
  2. Anthony, K.R.N., Helmstedt, K.J., Bay, L.K., Fidelman, P., Hussey, K.E., Lundgren, P., Mead, D., McLeod, I.M., Mumby, P.J., Newlands, M., Schaffelke, B., Wilson, K.E., & Hardisty, P.E. (2020) Interventions to help coral reefs under global change – A complex decision challenge. PLOS One. 10.1371/journal.pone.0236399.
  3. Arthington, A.H., Pearson, R.G., Godfrey, P.C., Karim, F., & Wallace, J. (In press) Integrating freshwater wetland science into planning for Great Barrier Reef sustainability. Aquatic Conservation: Marine and Freshwater Ecosystems. 
  4. Bahadori, M., Chen, C., Lewis, S., Rashti, M.R., Cook, F., Parnell, A., Esfandbod, M., & Stevens, T. (2020) Tracing the sources of sediment and associated particulate nitrogen from different land uses in the Johnstone River catchment, Wet Tropics, north-eastern Australia. Marine Pollution Bulletin 157, 111344. doi: 10.1016.j.marpolbul.2020.111344.
  5. Baker, R., Taylor, M.D., Able, K.W., Beck, M.W., Cebrian, J., Colombano, D.D., Connolly, R.M., Currin, C., Deegan, L.A., Feller, I.C., Gilby, B.L., Kimball, M.E., Minello, T.J., Rozas, L.P., Simenstad, C., Turner, R.E., Waltham, N.J., Weinstein, M.P., Ziegler, S.L., zu Ermgassen, P.S.E., Alcott, C., Alford, S.B., Barbeau, M.A., Crosby, S.C., Dodds, K., Frank, A., Goeke, J., Goodridge Gaines, L.A., Hardcastle, F.E., Henderson, C.J., James, W.R., Kenworthy, M.D., Lesser, J., Mallick, D., Martin, C.W., McDonald, A.E., McLuckie, C., Morrison, B.H., Nelson, J.A., Norris, G.S., Ollerhead, J., Pahl. J.W., Ramsden, S., Rehage, J.S., Reinhardt, J.F., Rezek, R.J., Risse, L.M., Smith, J.A.M., Sparks, E.L., & Staver, L.W. (2020) Fisheries rely on threatened salt marshes. Science 270, 670-671. doi: 1126/science.abe9332.
  6. Baker, R., & Waltham, N. (2020) Tethering mobile aquatic organisms to measure predation: A renewed call for caution. Journal of Experimental Marine Biology and Ecology 523, 151270. doi: 10.1016/j.jembe.2019.151270.
  7. Baptista, V., Leitao, F., Morais, P., Teodosio, M.A., & Wolanski, E. (2020) Modelling the ingress of a temperate fish larva into a nursery coastal lagoon. Estuarine, Coastal and Shelf Science 235, 106601. doi: 10.1016/j.ecss.2020.106601.
  8. Barrios-Garrrido, H.A., Montiel-Villalobos, M.G., Palmar, J., & Rodriguez-Clark, K.M. (2020) Wayu’u capture of green turtles, Chelonia mydas, in the Gulf of Venezuela: A major Caribbean artisanal turtle fishery. Ocean and Coastal Management 188, 105123. doi: 10.1016/j.ocecoaman.2020.105123.
  9. Barrios-Garrido, H., Shimada, T., Diedrich, A., & Hamann, M. (2020) Conservation and enforcement capacity index (CECi): Integrating human development, economy, and marine turtle status. Journal of Environmental Management 262, 110311. doi: 10.1016/j.jenvman.2020.110311.
  10. Bayraktarov, E., Brisbane, S., Hagger, V., Smith, C.S., Wilson, K. A., Lovelock, C. E., Gillies, C., Steven, A.D.L., & Saunders, M. I. (2020) Priorities and Motivations of Marine Coastal Restoration Research. Frontiers in Marine Science, 7, Article number: 484.
  11. Benson, L.J., Pearson, R.G. (2020) Dynamics of organic material and invertebrates in a tropical headwater stream. Hydrobiologia, 847: 121–136 (2020). https://doi.org/10.1007/s10750-019-04076-1.
  12. Bostrom-Einarsson, L., Babcock, R.C., Bayraktarov, E., Ceccarelli, D., Cook N., Ferse, S.C.A., Hancock, B., Harrison, P., Hein, M., Shaver, E., Smith, A., Suggett, D., Stewart-Sinclair, P.J., Vardi, T., & McLeod, I. M. (2020) Coral restoration – A systematic review of current methods, successes, failures and future directions. PLOSone, 1-24. doi: 10.1371/journal.pone.0226631.
  13. Buelow, C.A., & Waltham, N.J. (2020) Restoring tropical coastal wetland water quality: ecosystem service provisioning by a native freshwater bivalve. Aquatic Sciences, 82:77. doi: 10.1007/s00027-020-00747-7.
  14. Canning, A.D., & Death, R.G. (2020) The influence of nutrient enrichment on riverine food web function and stability. Ecology and Evolution, 1-13. doi: 10.1002.ece3.7107.
  15. Ceccarelli, D.M., McLeod, I.M., Bostrom-Einarsson, L., Bryan, S.E., Chartrand, K.M., Emslie, M.J., Gibbs, M.T., Rivero, M.G., Hein, M.Y., Heyward, A., Kenyon, T.M., Lewis, B.M., Mattocks, N., Newlands, M., Schlappy, M-L., Suggett, D.J., & Bay, L.K. (2020) Substrate stabilisation and small structures in coral restoration: State of knowledge, and considerations for management and implementation. PLOS ONE. doi: 10.1371/journal.pone.0240846.
  16. Connolly, N.M., Pearson, R.G. (2020) Do constrained immigration rates and high β diversity explain contrasting productivity-diversity patterns measured at different scales? Oecologia, 194(3):481-490. doi: 10.1007/s00442-020-04766-x.
  17. Davis, A., Pusey, B.J., & Betancur-R., R. (2020) Effects of adoption of freshwater residency on life-history ecology of terapontid grunters. Freshwater Biology 1-14. doi: 10.1111/fwb.13499.
  18. Devlin, M., Smith, A., Graves, C.A., Petus, C., Tracey, D., Maniel, M., Hooper, E., Kotra, K., Samie, E., Loubser, D., Lyons, B.P. (2020) Baseline assessment of coastal water quality, in Vanuatu, South Pacific: Insights gained from in-situ sampling. Marine Pollution Bulletin, 160:111651. doi: 10.1016/j.marpolbul.2020.111651.
  19. Donaldson, J.A., Drews Jr, P., Bradley, M.J., Morgan, D., Baker, R., & Ebner, B.C. (2020) Countering low visibility in video survey of an estuarine fish assemblage. Pacific Conservation Biology 26, 190-200. doi: 10/1071/PC19019.
  20. Duke, N.C. (2020) A systematic revision of the vulnerable mangrove genus Pelliciera (Tetrameristaceae) in equatorial America. Blumea – Biodiversity, Evolution and Biogeography of Plants 65, 107-120. doi: 10.3767/blumea.2020.65.02.04.
  21. Ebner, B.C., Donaldson, J.A., Courtney, R., Fitzpatrick, R., Starrs, D., Fletcher, C., & Seymour, J. (2020) Averting danger under the bridge: video confirms adult Small-toothed moray, tolerate salinity before and during tidal influx. Pacific Conservation Biology 26, 182-189. doi: 10.1071/PC19023.
  22. Ebner, B.C., & Kemp, D. (2020) The boy can dance: Ritual courtship of the Opal cling goby. Pacific Conservation Biology 26, 201/202. doi: 10.1071/PC19020.
  23. Edmunds, R.C., Burrows, D,. (2020) Got Glycogen?: Development and Multispecies Validation of the Novel Preserve, Precipitate, Lyse, Precipitate, Purify (PPLPP) Workflow for Environmental DNA Extraction from Longmire’s Preserved Water Samples. Journal of Biomolecular Techniques, 31(4):125-150. doi: 10.7171/jbt.20-3104-003.
  24. Fillols, E.F. & Davis, A.M. (2020) Soil-binding adjuvants can reduce herbicide loss via runoff. Australian Society of Sugar Cane Technologists 42, 433-443.
  25. Fillols, E., Davis, A.M., Lewis, S.E., & Ward, A. (2020) Combining weed efficacy, economics and environmental considerations for improved herbicide in the Great Barrier Reef catchment area. Science of the Total Environment 720, 137481. doi: 10.1016/j.scitotenv.2020.137481.
  26. Fitzsimons, J.A., Branigan, S., Gillies, C.L., Brumbaugh, R.D., Cheng, J., DeAngelis, B.M., Geselbracht, L., Hancock, B., Jeffs, A., McDonald, T., McLeod, I.M., Pogoda, B., Theuerkauf, S.J., Thomas, M., Westby, S., & zu Ermgassen, P.S.E. (2020) Restoring shellfish reefs: Global guidelines for practitioners and scientists. Conservation Science and Practice 198. doi: 10.1111/csp2.198.
  27. Gilby, B.L., Weinstein, M.P., Baker, R., Cebrien, J., Alford, S.B., Chelsky, A., Colombano, D., Connolly, R.M., Currin, C.A., Feller, I.C., Frank, A., Goeke, J.A., Goodridge Gaines, L.A., Hardcastle, F.E., Henderson, C.J., Martin, C.W., McDonald, A.E., Morrison, B.H., Olds, A.D., Rehage, J.S., Waltham, N.J., & Ziegler, S.L. (2020) Human actions alter tidal marsh seascapes and the provision of ecosystem services. Special issue: Concepts and Controversies in Tidal Marsh Ecology Revisited. doi: 10.1007/s12237-020-00830-0.
  28. Gillies, C.L., Castine, S.A., Alleway, H.K., Crawford, C., Fitzsimons, J.A., Hancock, B., Koch, P., McAfee, D., McLeod, I.M., & zu Ermgassen, P.S.E. (2020) Conservation status of the Oyster Reef ecosystem of Southern and Eastern Australia. Global Ecology and Conservation, 22, e00988. doi: 10.1016/j.gecco.2020.e00988.
  29. Godfrey P.C., Pearson R.G., Pusey B.J., Arthington A.H. (2020) Drivers of zooplankton dynamics in a small tropical lowland river. Marine and Freshwater Research, 72, 173-185. doi:10.1071/MF20067.
  30. Hamman, E., Pointon, R., Purandare, J. (2020) Protecting coastal wetland habitat for migratory shorebirds: Is Australian law doing enough? Environmental and Planning Law Journal, 37(4), pp. 477-496.
  31. Hayes, M.A., McClure, E.C., York, P.H., Jinks, K.I., Rasheed, M.A., Sheaves, M., & Connolly, R.M. (2020) The differential importance of deep and shallow seagrass to Nekton assemblages of the Great Barrier Reef. Diversity 12(8), 292. doi: 10.3390/d12080292.
  32. Hoffmann, L., Edwards, W., York, P.H., & Rasheed, M.A. (2020) Richness of primary producers and consumer abundance mediate epiphyte loads in a tropical seagrass system. Diversity, 12(10): 384. doi: 3390/d12100384.
  33. Huerlimann, R., Cooper, M.K., Edmunds, R.C., Villacorta-Rath, C., Le Port, A., Robson, H.L.A., Strugnell, J.M., Burrows, D., & Jerry, D.R. (2020) Enhancing tropical conservation and ecology research with aquatic environmental DNA methods: An introduction for non-environmental DNA specialists. Animal Conservation, 1-14. doi: 10.1111/acv.12583.
  34. Huerlimann, R., Maes, G.E., Maxwell, M. J., Mobli, M.i, Launikonis, B. S., Jerry, D. R., and Wade, N. M. (2020) Multi-species transcriptomics reveals evolutionary diversity in the mechanisms regulating shrimp tail muscle excitation-contraction coupling. Gene 752 144765 144765. https://doi.org/10.1016/j.gene.2020.144765.
  35. Jinks, K.I., Rasheed, M.A., Brown, C.J., Olds, A.D., Schlacher, T.A., Sheaves, M., York, P.H., & Connolly, R.M. (2020) Saltmarsh grass supports fishery food webs in subtropical Australian estuaries. Estuarine, Coastal and Shelf Science 238, 106719. doi: 10.1016/j.ecss.2020.106719.
  36. Joy, M.K., & Canning, A.D. (2020) Shifting baselines and political expediency in New Zealand’s freshwater management. Marine and Freshwater Research. doi: 10.1071/MF20210.
  37. Kelleway, J.J., Iles, J.A., Kobayashi, T., & Ling, J.N.E. (2020) Resilience of a native soil seed bank in a floodplain lake subjected to cropping, grazing and extended drought. Marine and Freshwater Research. doi:10.1071/Mf19386.
  38. Lintermans, M., Geyle, H.M., Beatty, S., Brown, C., Ebner, B.C., Freeman, R., Hammer, M.P., Humphreys, W.F., Kennard, M.J., Kern, P., Martin, K., Morgan, D., Raadik, T.A., Unmack, P.J., Wager, R., Woinarski, J.C.Z., Garnett, S.T. (2020) Big trouble for little fish: Australian freshwater fishes in imminent risk of extinction. Pacific Conservation Biology 26, 365-377. doi: 10.1071/PC19053.
  39. McAfee, D., McLeod, I.M., Bostrom-Einarsson, L., & Gillies, C.L. (2020) The value and opportunity of restoring Australia’s lost rock oyster reefs. Restoration Ecology 28, 304-314. doi: 10.1111/rec.13125.
  40. McKenzie, L.J., Nordlund, L.M., Jones, B.L., Cullen-Unsworth, L.C., Roelfsema, C., & Unsworth, R.K.F. (2020) The global distribution of seagrass meadows. Environmental Research Letters 15, 074041. doi: 10.1088/1748-9326/ab7d06.
  41. McLeod, I.M., Heller-Wagner, G., Gillies, C., Bostrom-Einarsson, L., & Dwyer, P.G. (2020) Hitching a ride on Hercules: fatal epibiosis drives ecosystem change from mud banks to oyster reefs. Ecology, e03032. doi: 10.1002/ecy.3032.
  42. Phiri, B.J., Pita, A.B., Hayman, D.T.S., Biggs, P.J., Davis, M.T., Fayaz, A., Canning, A.D., French, N.P., & Death, R.G. (2020) Does land use affect pathogen presence in New Zealand drinking water supplies? Water Research 185, 116229. doi: 10.1016/j.watres.2020.116229.
  43. Ricart, A.M., York, P.H., Bryant, C.V., Rasheed, M.A., lerodiaconou, D., & Macreadie, P.I., (2020) High variability of Blue Carbon storage in seagrass meadows at the estuary scale. Scientific Reports 10, 5865. doi: 10.1038/s41598-020-62639-y.
  44. Rincon-Sandoval, M., Duarte-Ribeiro, E., Davis, A.M., Santaquiteria, A., Hughes, L.C., Baldwin, C.C., Soto-Torres, L., Acero P., A., Walker, Jr, H. J., Carpenter, K.E., Sheaves, M., Ortí, G., Arcila, D., Betancur-R., R. (2020) Evolutionary determinism and convergence associated with water-column transitions in marine fishes. Proceedings of the National Academy of Sciences, 117 (52): 33396-33403. doi: 10.1073/pnas.20065111.
  45. Rodellas, V., Cook, P.G., McCallum, J., Andrisoa, A., Meulé, S., Stieglitz, T.C. (2020) Temporal variations in porewater fluxes to a coastal lagoon driven by wind waves and changes in lagoon water depths. Journal of Hydrology: 581, 124363. doi: 10.1016/j.jhydrol.2019.124363.
  46. Saunders, M.I.,  Doropoulos, C., Bayraktarov, E., Babcock, R.C., Gorman, D., Eger, A.M., Vozzo, M.L., Gillies, C.L., Vanderklift, M.A.,  Steven, A.D.L., Bustamante, R.H., Silliman, B.R. (2020) Bright Spots in Coastal Marine Ecosystem Restoration. Current Biology 30(24): R1500-R1510. https://doi.org/10.1016/j.cub.2020.10.056
  47. Scott, A.L., York, P.H., & Rasheed, M.A. (2020) Green turtle (Chelonia mydas) grazing plot formation creates structural changes in a multi-species Great Barrier Reef seagrass meadow. Marine Environmental Research 162, 105183. doi: 10.1016/j.marenvres.2020.105183.
  48. Sheaves, M., Abrantes, K., Barnett, A., Benham, C., Dale, P., Mattone, C., Sheaves, A., Waltham, N., & Bradley, M. (2020) The consequences of paradigm change and poorly validated science: The example of the value of mangroves to fisheries. Fish and Fisheries, 1-9. doi: 10.1111/faf.12479.
  49. Stewart-Sinclair, P.J., Purandare, J., Bayraktarov, E., Waltham, N.J., Reeves, S.E., Statton, J., Sinclair, E.A., Brown, B.M., Shribman, Z.I., & Lovelock, C.E. (2020) Blue restoration – building confidence and overcoming barriers. Frontiers in Marine Science 7. doi: 10.3389/fmars.2020.541700.
  50. Stieglitz, T.C., Dujon, A.M., Peel, J.R., Amice, E. (2020) The potential of marginal coastal nursery habitats for the conservation of a culturally important Caribbean marine species. Diversity and Distributions, 26: 565– 574. https://doi.org/10.1111/ddi.13044.
  51. Thomas, C.R., Bennett, W.W., Garcia, C., Simmonds, A., Honchin, C., Turner, R., Madden Hof, C.A., & Bell, I. (2020) Coastal bays and coral cays: Multi-element study of Chelonia mydas forage in the Great Barrier Reef (2015-2017). Science of the Total Environmental 740, 140042, 1-12. doi: 10.1016/j.scitotenv.2020.140042.
  52. Thurstan, R.H., Diggles, B.K., Gillies, C.L., Strong, M.K., Kerkhove, R., Buckley, S.M., King, R.A., Smythe, V., Heller-Wagner, G., Weeks, R., Palin, F., & McLeod, I. (2020) Charting two centuries of transformation in a coastal social-ecological system – A mixed methods approach.  Global Environmental Change 61, 102058. doi: 10.1016/j.gloenvcha.2020.102058.
  53. Tonin, A.M., Boyero, L., Bambi, P., Pearson, R.G., Correa‐Araneda, F., Gonçalves, J.F. (2020) High within‐stream replication is needed to predict litter fluxes in wet–dry tropical streams. Freshwater Biology. 2020; 65: 688– 697. https://doi.org/10.1111/fwb.13459
  54. Vilas, Maria P., Thorburn, Peter J., Fielke, Simon, Webster, Tony, Mooij, Martijn, Biggs, Jody S., Zhang, Yi-Fan, Adham, Adam, Davis, Aaron, Dungan, Bertrand, Butler, Roger, and Fitch, Peter (2020) 1622WQ: a web-based application to increase farmer awareness of the impact of agriculture on water quality. Environmental Modelling and Software 132 104816 . https://doi.org/10.1016/j.envsoft.2020.104816.
  55. Villacorta-Rath, C., Adekunle, A.I., Edmunds, R.C., Strugnell, J.M., Schwarzkoph, L., & Burrows, D. (2020) Can environmental DNA be used to detect first arrivals of the cane toad, Rhinella marina, into novel locations? Environmental DNA, 2-12. doi: 10.1002.edn3.114.
  56. Waltham, N.J., Coleman, L., Buelow, C., Fry, S., & Burrows, D. (2020) Restoring fish habitat values on a tropical agricultural floodplain: Learning from two decades of aquatic invasive plant maintenance efforts. Ocean and Coastal Management 198, 105355. doi: 10.1016/j.ocecoaman.2020.105355.
  57. Waltham, N.J., Elliott, M., Lee, S.Y., Lovelock, C., Duarte, C.M., Buelow, C., Simenstad, C., Nagelkerken, I., Claassens, L., Wen, C.K-C., Barletta, M., Connolly, R.M., Gillies, C., Mitsch, W.J., Ogburn, M.B., Purandare, J., Possingham, H., & Sheaves, M. (2020) UN Decade on ecosystem restoration 2021-2030 – What chance for success in restoring coastal ecosystems? Frontiers in Marine Science 7, 71. doi: 10.3389/fmars.2020.0071.
  58. Waltham, N.J., McCann, J., Power, T., Moore, M., & Buelow, C. (2020) Patterns of fish use in urban estuaries: Engineering maintenance schedules to protect broader seascape habitat. Estuarine, Coastal and Shelf Science 238, 106729. doi: 10.1016/j.ecss.2020.106729.
  59. Waltham, N.J., Pyott, M., Buelow, C., & Wearne, L. (2020) Mechanical harvester removes invasive aquatic weeds to restore water quality and fish habitat values on the Burdekin floodplain. Ecological Management & Restoration 21(3). doi: 10.1111/emr.12427.
  60. Waltham, N.J., & Sheaves, M. (2020) Thermal exposure risks to mobile tropical marine snails: Are eco-engineered rock pools on seawalls scale-specific enough for comprehensive biodiversity outcomes? Marine Pollution Bulletin 156, 111237. doi: 10.1016/j.marpolbul.2020.111237.
  61. Whalan, M.A., Whippo, R.D.B., Stachowicz, J.J., York, P.H., Aiello, E., Alcoverro, T., Altieri, A.H., Benedetti-Cecchi, L., Bertolini, C., Bresch, M., Bulleri, F., Carnell, P.E., Cimon, S., Connolly, R.M., Cusson, M., Diskin, M.S., D’Souza, E., Flores, A.A.V., Fodrie, F.J., Galloway, A.W.E., Gaskins, L.C., Graham, O.J., Hanley, T.C., Henderson, C.J., Hereu, C.M., Hessing-Lewis, M., Hovel, K.A., Hughes, B.B., Hughes, A.R., Hultgren, K.M., Janes, H., Janiak, D.S., Johnson, L.N., Jorgenson, P., Kelaher, B.P., Kruscel, C., Lanham, B.S., Lee, K-S., Lefcheck, J.S., Lozano-Alvarez, E., Macreadie, P.I., Montheith, Z.L., O’Connor, N.E., Olds, A.D., O’Leary, J.K., Patrick, C.J., Pino, O., Poore, A.G.B., Rasheed, M.A., Raymond, W.W., Reiss, K., Rhoades, O.K., Robinson, M.T., Ross, P.G., Rossi, F., Schlacher, T.A., Seeman, J., Silliman, B.R., Smee, D.L., Theil, M., Unsworth, R.K.F., van Tussenbroek, B.I., Verges, A., Yeager, M.E., Yednock, B.K., Ziegler, S.L., & Duffy, J.E (2020). Climate drives the geography of marine consumption by changing predator communities. Proceedings of the National Academy of Sciences of the United States of America 117(45), 28160-28166. doi: 10.1073/pnas.2005255117.
  62. Wolanski, E., Choukroun, S., & Huu Nhan, N. (2020) Island building and overfishing in the Spratly Islands archipelago are predicted to decrease larval flow and impact the whole system. Estuarine, Coastal and Shelf Science 233, 106545. doi: 10.1016/j.ecss.2019.106545.
  63. Wolanski, E., Wattayakorn, G., Furukawa, K., Chavanich, S. A. (2020) Integrating science in the management of enclosed seas – a synthesis. Estuarine Coastal And Shelf Science, 234. 106647. pp. 1-3. DOI: 10.1016/j.ecss.2020.106647.
  64. Wolanski, E., & Lambrechts, J. (2020) The net water circulation in the far Northern Great Barrier Reef. Estuarine, Coastal and Shelf Science 235, 106569. doi: 10/1016/j.ecss.2019.106569.
  65. Younes, N., Joyce, K.E., & Maier, S.W. (2020) All models of satellitte-derived phenology are wrong, but some are useful: A case study from northern Australia. International Journal of Applied Earth Observations and Geoinformation 97, 102285. doi: 10.1016/j.jag.2020.102285.
  66. Younes, N., Northfield, T.D., Joyce, K.E., Maier, S.W., Duke, N.D., & Lymburner, L. (2020) A novel approach to modelling mangrove phenology from satellite images: A case study from northern Australia. Remote Sensing 12, 4008. doi: 10.3390/rs12244008.
  67. zu Ermgassen, P.S.E., Thurstan, R.H., Corrales, J., Alleway, H., Carranza, A., Dankers, N., DeAngelis, B., Hancock, B., Kent, F., McLeod, I., Pogoda, B., Liu, Q., & Sanderson, W.G. (2020) The benefits of bivalve reef restoration: A global synthesis of underrepresented species. Aquatic Conservation: Marine and Freshwater Ecosystems 30, 2050-2065. doi: 10.1002/aqc.3410.


  1. Adame, M.F., Arthington, A.H., Waltham, N., Hasan, S., Selles, A., & Ronan, M. (2019) Managing threats and restoring wetlands within catchments of the Great Barrier Reef, Australia. Aquatic Conservation: Marine and Freshwater Ecosystems 29, 829-939. Wiley. doi: 10.1002/aqc.3096.
  2. Adame, M.F., Franklin, H., Waltham, N.J., Rodriquez, S., Kavehei, E., Turschwell, M.P., Balcombe, S.R., Kaniewski, P., Burford, M.A., & Ronan, M. (2019) Nitrogen removal by tropical floodplain wetlands through dentrification. Marine and Freshwater Research. doi: 10.1071/MF18490.
  3. Amir, A.A., & Duke, N.C. (2019) Distinct characteristics of canopy gaps in the subtropical mangroves of Moreton Bay, Australia. Estuarine, Coastal and Shelf Science 222, 66-80. doi: 10.1016/j.ecss.2019.04.007.
  4. Andrisoa, A., Stieglitz, T.C., Rodellas, V., & Raimbault, P. (2019) Primary production in coastal lagoons supported by groundwater discharge and porewater fluxes inferred from nitrogen and carbon isotope signatures. Marine Chemistry 210, 48-60. doi: 10.1016/j.marchem.2019.03.003.
  5. Bahadori, M., Chen, C., Lewis, S., Rashti, M.R., Cook, F., Parnell, A., Esfanbod, M., & Boyd, S. (2019) A novel approach of combining isotopic and geochemical signatures to differentiate the sources of sediments and particulate nutrients from different land uses. Science of the Total Environment 655, 129-140. doi: 10.1016/j.scitotenv.2018.11.084.
  6. Baptista, V., Morais, P., Cruz, J., Castanho, S., Ribeiro, L., Pousao-Ferreira, P., Leitao, F., Wolanski, E., & Teodosio, M.A. (2019) Swimming abilities of temperate pelagic fish larvae prove that they may control their dispersion in coastal areas. Diversity 11(10), 185. doi: 10.3390/d11100185.
  7. Barrios-Garrido, J., Wildermann, N., Diedrich, A., Hamann, M. (2019) Conflicts and solutions related to marine turtle conservation initiatives in the Caribbean basin: identifying new challenges. Ocean and Coastal Management 171, 19-27
  8. Barrios-Garrido, J., Petit-Rodriguez, M.J., Espinoza-Rodriguez, N., Wildermann, N. (2019) Marine Debris and Marine Turtles in the Venezuelan Guajira Peninsula: A New Menace. Marine Turtle Newsletter 156, 16.
  9. Bayraktarov E, Stewart‐Sinclair PJ, Brisbane S, Boström‐Einarsson L, Saunders MI, Lovelock CE, Possingham HP, Mumby PJ, Wilson KA (2019) Motivations, success and cost of coral reef restoration. Restoration Ecology: doi: 10.1111/rec.12977.
  10. Burndred, K.R., Cockayne, B.J., Donaldson, J.A., & Ebner, B.C. (2019) Natural flow events influence the behaviour and movement patterns of eel-tailed catfish (Tandanus tandanus) in a subtropical Queensland river. Australian Journal of Zoology 66, 185-194. doi: 10.1071/ZO18033.
  11. Burrows, D.W., Purandare, J., Bay, L., Cook, N., Koopman, D., Long, S., Lundgren, P., Mead, D., Morris, S., Newlands, M., Roth, C., Wachenfeld, D., Smith, A.K., & McLeod, I.M. (2019) Symposium report: Great Barrier Reef restoration symposium, 2018. Ecological Management & Restoration 20, 175-178. doi: 10.1111/emr.12368.
  12. Canning, A.D., & Death, R.G. (2019) Ecosystem Health Indicators – Freshwater Environments. Eycyclopedia of Ecology, 2nd edition, Volume 1. doi: 10.1016/B978-0-12-409548-9.10617-7.
  13. Canning, A.D., & Death, R.G., (2019) Food web structure but not robustness differ between rivers, lakes and estuaries. Oecologia Australia 23(1), 112-126. doi: 10.4257/oeco.2019.2301.10.
  14. Canning, A.D., Death, R.G., & Gardner, E.M. (2019) Forest canopy affects stream macroinvertebrate assemblage structure but not trophic stability. Freshwater Science 38(1), 40-52. doi: 10.1086/701378.
  15. Ceccarelli, D.M., Evans, R.D., Logan, M., Mantel, P., Puotinen, M., Petus, C., Russ, G.R., & Williamson, D.H. (2019) Long-term dynamics and drivers of coral and macroalgal cover on inshore reefs of the Great Barrier Reef Marine Park. Ecological Applications. doi: 10.1002/eap.2008.
  16. Creighton, C., Prahalad, V.N., McLeod, I., Sheaves, M., Taylor, M.D., & Walshe, T. (2019) Prospects for seascape repair: Three case studies from eastern Australia. Ecological Management & Restoration. doi: 10.1111/emr.12384.
  17. Critchell, K., Hamann, M., Wildermann, N., & Grech, A. (2019) Predicting the exposure of plastic pollution in a complex island archipelago. Environmental Pollution 252, 982-991. doi: 10.1016/j.envpol.2019.06.031.
  18. David, M., Bailly-Comte, V., Munaron, D., Fiandrino, A., & Stieglitz, T.C. (2019) Groundwater discharge to coastal streams – A Significant pathway for nitrogen inputs to a hypertrophic Mediterranean coastal lagoon. Science of the Total Environment 677, 142-155. doi: 10.1016/j.scitotenv.2019.04.233.
  19. Davis, A.M., & Neelamraju, C. (2019) Quantifying water quality improvements through use of precision herbicide application technologies in a dry-tropical, furrow-irrigated cropping system. Water 11, 2326. doi: 10.3390/w11112326.
  20. Devlin, M.J., Lyons, B.P., Bacon, J., Edmonds, N., Tracey, D., Al Zaidan, A.S., Al Ajmi, F., Al-Wassan. Z.A., Al-Hussain, M.M., Al Khaled, H., & Le Quesne, W.J.F. (2019) Principles to enable comprehensive national marine ecosystem status assessments from disparate data: The state of marine environment in Kuwait. Estuarine, Coastal and Shelf Science 230, 106407. doi: 10.1016/j.ecss.2019.106407.
  21. Dubac, A., Baker, R., Marchand, C., Waltham, N.J., & Sheaves, M. (2019) Hypoxia in mangroves: occurrence and impact on valuable tropical fish habitat. Biogeosciences 16, 3959-3976. doi: 10.5194/bg-16-3959-2019.
  22. Dubuc, A., Waltham, N.J., Baker, R., Marchand, C., & Sheaves, M. (2019) Patterns of fish utilisation in a tropical Indo-Pacific mangrove-coral seascape, New Caledonia. PLoS ONE. doi: 10.1371.journal.pone.0207168.
  23. Duffy, J.M., Benedetti-Cecchi, L., Trinanes, J., Muller-Karger, F.E., Ambo-Rappe, R., Bostrom, C., Buschmann, A.H., Byrnes, J., Coles, R.G., Creed, J., Cullen-Unsworth, L.C., Diaz-Pulido, G., Duarte, C.M., Edgar, G.J., Fortes, M., Goni, G., Hu, C., Huang, X., Hurd, C.L., Johnson, C., Konar, B., Krause-Jensen, D., Krumhansl, K., Macreadie, P., Marsh, H., McKenzie, L.J., Mieszkowska, N., Miloslavich, P., Montes, E., Nakaoka, M., Norderhaug, K.M., Norlund,, L.M., Orth, R.J., Prathep, A., Putman, N.F., Samper-Villarreal, J., Serrao, E.A., Short, F., Pinto, I.S., Steinberg, P., Stuart-Smith, R., Unsworth, R.K.F., van Kuelen, M., van Tussenbroek, B.I., Wang, M., Waycott, M., Weatherdon, L.V., Wernberg, T., & Yaakub, S.M. (2019) Toward a coordinated global observing system for seagrasses and marine macroalgae. Frontiers in Marine Science 6, 317. doi: 10.3389/fmars.2019.00317.
  24. Dujan, A.M., Stieglitz, T.C., Amice, E., & Webber, D.M. (2019) Snail leaps and bounds: drivers of the diel movement pattern of a large invertebrate, the Caribbean queen conch (Lobatus gigas), in a marginal inshore habitat. Canadian Journal of Zoology 97, 436-445. doi: 10.1139/cjz-2018-0106.
  25. Duke, N.C., Field, C., Mackenzie, J.R., Meynecke, J.-O., & Wood, A.L. (2019) Rainfall and its possible hysteresis effect on the proportional cover of tropical tidal wetland mangroves and saltmarsh-saltpans. Marine and Freshwater Research.  doi: 10.1071/MF18321.
  26. Dunn, R.J.K., Welsh, D.T., Teasdale, P.T., Gilbert, F., Poggiale, J-C., & Waltham, N.J. (2019) Effects of the bioturbating marine yappy Trypaea australiensis on sediment properties in sandy sediments receiving mangrove leaf litter. Journal of Marine Science and Engineering 7, 426. doi: 10.3390/jmse7120426.
  27. Ebner, B.C., Donaldson, J.A., & Starrs, D. (2019) Barred grunters shift objects to access benthic invertebrates in a crater lake. Food Webs 20, e00119. doi: 10.1016/j.fooweb.2019.e00119.
  28. Ebner, B.C., Donaldson, J.A., & Starrs, D. (2019) Juvenile silver grunter Mesopristes argenteus shift benthic objects to access food. Journal of Fish Biology 95, 974-978. doi: 10.1111/jfb.14090.
  29. Espinoza-Rodriguez, N., de Turris-Morales, K., Barrios-Garrido, H. (2019) Descripcion craneometrica de cinco individuos del delfin nariz de botella Tursiops truncatus Montagu, 1821 (Cetartiodactyla: Delphinidae) presentes en las costas del Golfo de Venezuela. Ecotropicos, 31.
  30. Espinoza-Rodriguez, N., de Turris-Morales, K., Shimada, T., & Barrios-Garrido, H. (2019) Guiana Dolphin (Sotalia guianaensis) in the southern Gulf of Venezuela: Seasonal distribution, group size, and habitat use. Regional Studies in Marine Science 32, 100874. doi: 10.1016/j.rsma.2019.100874.
  31. Gouezo, M., Golbuu, Y., Fabricius, K., Olsudong, D., Mereb, G., Nestor, V., Wolanski, E., Harrison, P., & Doropoulos, C. (2019) Drivers of recovery and reassembly of coral reef communities. The Royal Society Publishing. doi: 10.6084/m9.figshare.c.4388417.
  32. Jinks, K., Brown, C., Rasheed, M., Scott, A., Sheaves, M., York P., and Connolly, R. (2019) Habitat complexity influences the structure of food webs in Great Barrier Reef seagrass meadows. Ecosphere 10, 11. doi: 10.1002/ecs2.2928.
  33. Lear, K.O., Gleiss, A.C., Whitty, J.M., Fazeldean, T., Albert, J.R., Green, N., Ebner, B.C., Thorburn, D.C., Beatty, J., & Morgan, D.L. (2019) Recruitment of a critically endangered sawfish into a riverine nursery depends on natural flow regimes. Scientific Reports 9:17071. doi: 10.1038/s41598-019-53511-9.
  34. MacNeil, M.A., Mellin, C., Matthews, S., Wolff, N.H., McClanahan, T.R., Devlin, M., Drovandi, C., Mengersen, K., & Graham, N.A.J. (2019) Water quality mediates resilience on the Great Barrier Reef.  Nature Ecology & Evolution 3, 630-527.
  35. McLeod, I.M., Bostrom-Einarsson, L., Creighton, C., D’Anastasi, B., Diggles, B., Dwyer, P.G., Firby, L., Le Port, A., Luongo, A., Martinez-Baena, F., McOrrie, S., Heller-Wagner, G., & Gillies, C.L. (2019) Habitat value of Sydney rock oyster (Saccostrea glomerata) reefs on soft sediments. CSIRO Publishing. doi: 10.1071/MF18197.
  36. McLeod, I.M., Williamson, D.H., Taylor, S., Srinivasan, M., Read, M., Boxer, C., Mattocks, N., & Ceccarelli, D.M. (2019) Bommies away! Logistics and early effects of repositioning 400 tonnes of displaced coral colonies following cyclone impacts on the Great Barrier Reef. Ecological Management & Restoration. doi: 10.1111/emr.12381.
  37. Olsen, A., Konovalov, D.A., Philippa, B., Ridd, P., Wood, J.C., Johns, J., Banks, W., Girgenti, B., Kenny, O., Whinney, J., Calvert, B., Azghadi, M.T., & White, R.D. (2019) DeepWeeds: A multiclass weed species image dataset for deep learning. Scientific Reports 9:2058. doi: 10.1038/s41598-018-38343-3.
  38. Petus, C., Waterhouse, J., Lewis, S., Vacher, M., Tracey, D., & Devlin, M. (2019) A flood of information: Using sentinel-3 water colour products to assure continuity in the monitoring of water quality trends in the Great Barrier Reef (Australia). Journal of Environmental Management 248, 109255. doi: 10.1016/j.jenvman.2019.07.026.
  39. Saha, N., Webb, G.E., Zhao, J-X., Nguyen, A.D., Lewis, S.E., & Lough, J.M. (2019) Coral-based high-resolution rare earth element proxy for terrestrial sediment discharge affecting coastal seawater quality, Great Barrier Reef. Science Direct 254, 173-191. doi: 10.1016/j.gca.2019.04.004.
  40. Shumilova, O., Zak, D., Datry, T., von Schiller, D., Corti, R., Foulquier, A., Obrador, B., Tockner, K., Allan, D.C., Altermatt. F., Arce, M.I., Arnon, S., Banas, D., Banegas-Medina, A., Beller, E., Blanchette, M.L., Blanco-Libreros, J.F., Blessing, J., Boechat, L.G., Boersma, K., Bogan, M.T., Bonada, N., Bond, N.R., Brintrup, K., Bruder, A., Burrows, R., Cancellario, T., Carlson, S.M., Cauvy-Fraunie, S., Cid, N., Danger, M., de Freitas Terra, B., De Girolamo, A.M., del Campo R., Dyer, F., Elosegi, A., Faye, E., Febria, C., Figueroa, R., Four, B., Gessner, M.O., Gnohossou, P., Cerezo, R.G., Gomex-Gener, L., Graca, M.A.S., Guareschi, S., Gucker, B., Hwan, J.L., Kubkeka, S., Langhans, S.D., Leigh, C., Little, C.J., Lorenz, S., Marshall, J., McIntosh, A., Mendoza-Lera, C., Meyer, E.I., Milisa, M., Mlambo, M.C., Moleon, M., Negus, P., Niyogi, D., Papatheodoulou, A., Pardo, I., Paril, P., Pesic, V., Rodriguez-Lozano, P., Rolls, R.J., Sanchez-Montoya, M.M., Savic, A., Steward, A., Stubbington, R., Taleb, A., Vander Vorste, R., Waltham, N., Zoppini, A., & Zarfl, C. (2019) Simulating rewetting events in intermittent rivers and ephemeral streams: A global analysis of leached nutrients and organic matter. Global Change Biology, 1-21. doi: 10.1111/gcb.14537.
  41. Silva, C.N.S., Villacorta-Rath, C., Woodings, L.N., Murphy, N.P., Green, B.S., Hartmann, K., Gardner, C., Bell, J.J., & Strugnell, J.M. (2019) Advancing our understanding of the connectivity, evolution and management of marine lobsters through genetics. Reviews in Fish Biology and Fisheries 29(3), 669-687. doi: 10.1007/s11160-019-09573-z.
  42. Suggett DJ, Camp EF, Edmondson J, Boström‐Einarsson L, Ramler V, Lohr K, Patterson JT (2019) Optimizing return‐on‐effort for coral nursery and outplanting practices to aid restoration of the Great Barrier Reef. Restoration Ecology 27:683–693:
  43. Tamborski, J., van Beek, P., Rodellas, V., Monnin, C., Bergsma, E., Stieglitz, T., Heilbrun, C., Cochran, J.K., Charbonnier, C., Anschutz, P., Bejannin, S., & Bech, A. (2019) Temporal variability of lagoon-sea water exchange and seawater circulation through a Mediterranean barrier beach. Limnology and Oceanography, 1-22. doi: 10.1002/lno.11169.
  44. Trujillo-Gonzalez, A., Edmunds, R.C., Becker, J.A., & Hutson, K.S. (2019) Parasite detection in the ornamental fish trade using environmental DNA. Scientific Reports, 9-5173. doi: 10.1038/s41598-019-41517-2.
  45. von Schiller, D., Datry, T., Corti, R., Foulquier, A., Tockner, K., Marce, R., Garcia-Baquero, G., Odriozola, I., Obrador, B.., Elosegi, A., Mendoza-Lera, C., Gessner, M.O., Stubbington, R., Albarino, R., Allen, D.C., Altermatt, F., Arce, M.I., Arnon, S., Banas, D., Banegas-Medina, A., Beller, E., Blanchette, M.L., Blanco-Libreros, J.F., Blessing, J., Boechat, I.G., Boersma, K.S., Bogan, M.T., Bonada, N., Bond, N.R., Brintrup, K., Bruder, A., Burrows, R.M., Cancellario, T., Carlson, S.M., Cauvy-Fraunie, S., Cid, N., Danger, M., de Freitas Terra, B., Dehedin, A., De Girolamo, A.M., del Campo, R., Diaz-Villaneuva, V., Duerdoth, C.P., Dyer, F., Faye, E., Febria, C., Figueroa, R., Four, B., Gafny, S., Gomez, R., Gomez-Gener, L.I., Graca, M.A.S., Guareschi, S., Gucker, B., Hoppeler, F., Hwan, J.L., Kubheka, S., Laini, A., Langhans, S.D., Leigh, C., Little, C.J., Lorenz, S., Marshall, J., Martin, E.J., McIntosh, A., Meyer, E.I., Milisa, M., Mlambo, M.C., Moleon, M., Morais, M., Negus, P., Niyogi, D., Papatheodoulou, A., Pardo, I., Paril, P., Pesic, V., Piscart, C., Polasek, M., Rodrigues-Lozano, P., Rolls, R.J., Sanchez-Montoya, M.M., Savic, A., Shumilova, O., Steward, A., Taleb, A., Uzan, A., Vander Vorste, R., Waltham, N., Woelfle-Erskin, C., Zak, D., Zarfl, C., & Zoppini, A. (2019) Sediment respiration pulses in intermittent rivers and ephemeral streams. Global Biogeochemical Cycles. doi: 10.1029/2019GB006276.
  46. Waltham, N.J., Burrows, D., Wegscheidl, C., Buelow, C., Ronan, M., Connolly, N., Groves, P., Marie-Audas, D., Creighton, C., & Sheaves, M. (2019) Lost floodplain wetland environments and efforts to restore connectivity, habitat, and water quality settings on the Great Barrier Reef. Frontiers in Marine Science 6, 1/14. doi: 10.3389/fmars.2019.00071.
  47. Wang, X., Guo, Z., Xu, S., Yang, M., Chen, Q., Li, S., Zhong, C., Duke, N.C., He, Z., Wu, C-I., & Shi, S. (2019) Genes and the species concept – How much of the genomes can be exchanged? bioRxiv. doi: 10.1101/622019.
  48. Weber, U.W., Cook, P.G., Brennwald, M.S., Kipfer, R., & Stieglitz, T.C. (2019) A novel approach to quantify air-water gas exchange in shallow surface waters using high-resolution time series of dissolved atmospheric gasses. Environmental Science & Technology 53, 1463-1470. doi: 10.1021/acs.est.8b05319.
  49. Wu, P.P.Y., Mengersen, K., Caley, M.J., McMahon, K., Rasheed, M.A., & Kendrick, G.A. (2019) Analysing the dynamics and relative influence of variables affecting ecosystem responses using functional PCA and boosted regression trees: A seagrass case study. Methods in Ecology and Evolution 10(10), 1723-1733. doi: 10.1111/2041-210X.13269.


  1. Bainbridge, Z., Lewis, S., Bartley, R., Fabricius, K., Collier, C., Waterhouse, J., Garzon-Garcia, A., Robson, B., Burton, J., Wenger, A., & Brodie, J. (2018) Fine sediment and particulate organic matter: A review and case study on ridge-to-reef transport, transformations, fates, and impacts on marine ecosystems. Marine Pollution Bulletin 135, 1205-1220. doi: 10.1016/j.marpolbul.2018.08.002.
  2. Barrios-Garrido, H., Palmar, J., Wildermann, N., Rojas-Canizales, D., Diedrich, A., Hamann, M. (2018) Marine Turtle Presence in the Traditional Pharmacopoeia, Cosmovision, and Beliefs of Wayu´u Indigenous People. Chelonian Conservation and Biology 17(2), 177-186.
  3. Canning, A.D. (2018) Predicting New Zealand riverine fish reference assemblages. PeerJ. doi: 10.7717/peerj.4890.
  4. Canning, A.D., & Death, R.G. (2018) Relative ascendency predicts food web robustness. Ecological Research 33, 873-878. doi: 10.1007/s11284-018-1585-1.
  5. Canning, A.D., Death, R.G., & Gardner, E.M. (2018) The effect of forest canopy and flood disturbance on New Zealand stream food web structure and robustness. Austral Ecology 43, 352-358. doi: 10.1111/aec.12573.
  6. Caron, A.G.M.,Thomas, C.R., Berry, K.L.E., Mottie, C.A., Ariel, E., & Brodie, J.E. (2018) Ingestion of microplastic debris by green sea turtles (Chelonia mydas) in the Great Barrier Reef: Validation of a sequential extraction protocol. Marine Pollution Bulletin 127, 743-751. doi: 10.1016/j.marpolbul.2017.12.062.
  7. Caron, A.G.M., Thomas, C.R., Berry, K.L.E., Motti, C.A., Ariel, E., & Brodie, J.E. (2018) Validation of an optimised protocol for quantification of microplastics in heterogenous samples: A case study using green turtle chyme. MethodsX 5, 812-823. doi: 10.1016/j.mex.2018.07.009.
  8. Ceccarelli, D.M., Loffler, Z., Bourne, D.G., Al Moajil-Cole, G.S., Bostrom-Einarsson, L., Evans-Illidge, E., Fabricius, K., Glasl, B., Marshall, P., McLeod, I., Read, M., Schaffelke, B., Smith, A.K., Jorda, G.T., Williamson, D.H., Bay, L. (2018) Rehabilitation of coral reefs through removal of macroalgae: state of knowledge and considerations for management and implementation. Restoration Ecology. doi: 10.1111/rec.12852/suppinfo
  9. Collier, C.J., Langlois, L., Ow, Y., Johansson, C., Giammusso, M., Adams, M.P., O’Brien, K.R., & Uthicke, U. (2018) Losing a winner: thermal stress and local pressures outweigh the positive effects of ocean acidification for tropical seagrasses. New Phytologist. doi: 10.1111/nph.15234.
  10. Cook, P.G., Rodellas, V., Andrisoa, A., & Stieglitz, T.C. (2018) Exchange across the sediment-water interface quantified from porewater radon profiles. Journal of Hydrology 559, 873-883. doi: 10.1016/j.jhydrol.2018.02.070.
  11. Cook, P.G., Rodellas, V., & Stieglitz, T.C. (2018) Quantifying surface water, porewater, and groundwater interactions using tracers: Tracer fluxes, water fluxes, and end-member concentrations. Advancing Earth and Space Science. doi: 10.1002/2017WR021780.
  12. Cooper, M., Lewis, S.E., Stieglitz, T.C., & Smithers, S.G. (2018) Variability of the useful life of reservoirs in tropical locations: A case study from the Burdekin Falls Dam, Australia. International Journal of Sediment Research 33, 93-106. doi:  10.1016/j.ijsrc.2017.11.002.
  13. Datry, T., Foulquier, A., Corti, R., von Schiller, D., Tockner, K., Mendoza-Lera, C., Clement, J.C., Gessner, M.O., Moleon, M., Stubbington, R., Gucher, B., Albarino, R., Allen, D.C., Altermatt, F., Arce, M.E., Arnon, S., Banas, D., Banegas-Medina, A., Beller, E., Blanchette, M.L., Blanco-Libreros, J.F., Blessing, J.J., Boechat, I.G., Boersma, K.S., Bogan, M.T., Bonada, N., Bond, N.R., Brintrup Barria,K.C., Bruder, A., Burrows, R.M., Cancellario, T., Canhoto, C., Carlson, S.M., Cauvy-Fraunie, S., Cid, N., Danger, M., de Freitas Terra, B., De Girolamo, A.M., de La Barra, E., del Campo, R., Diaz-Villanueva, V.D., Dyer, F., Elosegi, A., Faye, E., Febria, C., Four, B., Gafny, S., Ghate, S.D., Gomez, R., Gomez-Gener, L., Graca, M.A.S., Guareschi, S., Hoppeler, F., Hwan, J.L., Jones, J.I., Kubheka, S., Laini, A., Langhans, S.D., Leigh, C., Little,C.J., Lorenz, S., Marshall, J.C., Martin, E., McIntosh, A.R., Meyer, E.I., Milisa, M., Mlambo, M.C., Morais, M., Moya, N., Negus, P.M., Niyogi, D.K., Papathoedoulou, A., Pardo, I., Paril, P., Pauls, S.U., Pesic, V., Polasek, M., Robinson, C.T., Rodriquez-Lozano, P., Rolls, R.J., Sanchez-Montoya, M.M., Savic, A., Shumilova, O., Sridhar, K.R., Steward, A.L., Storey, R., Taleb, A., Uzan, A., Vander Vorste, R., Waltham, N.J., Woelfle-Erskine, C., Zak, D., Zarfl, C., & Zoppini, A. (2018) A global analysis of terrestrial plant litter dynamics in non-perenial waterways. Nature Geoscience. doi: 10.1038/s41561-018-0134-4.
  14. Death, R., Canning, A., Magierowski, R., & Tonkin, J. (2018) Why aren’t we managing water quality to project ecological health? Farm Environmental Planning – Science, policy and practice.
  15. Ebner, B.C., Donaldson, J.A., & Starrs, D. (2018) Coal grunters shift benthic objects to access macroinvertebrates in a headwater stream. Pacific Conservation Biology 24, 417-418. doi: 10.1071/PC18042.
  16. Gillies, C.L., McLeod, I.M., Alleway, H.K., Cook, P., Crawford, C., Creighton, C., Diggles, B., Ford, J., Hamer, P., Heller-Wagner, G., Lebrault, E., Le Port, A., Russell, K., Sheaves, M., & Warnock, B. (2018) Australian shellfish ecosystems: Past distribution, current status and future direction. PLOSone. doi: 10.1371/journal.pone.0190914.
  17. Hagihara, R., Jones, R.E., Sobtzick, S., Cleguer, C., Garrigue, C., & Marsh, H. (2018) Compensating for geographic variation in detection probability with water depth improves abundance estimates of coastal marine megafauna. PLOS one, 1-15. doi: 10.1371/journal.pone.0191476.
  18. Hays, G.C., Alcoverro, T., Christianen, M.J.A., Duarte, C.M., Hamann, M., Macreadie, P.I., Marsh, H.D., Rasheed, M.A., Thums, M., Unsworth, R.K.F., York, P.H., & Esteban, N. (2018) New tools to identify the location of seagrass meadows: Marine grazers as habitat indicators. Frontiers in Marine Science 5(9), 1-6. doi: 10.3389/fmar.2018.00009.
  19. He, Z., Li, X., Yang, M., Wang, X., Zhong, C., Duke, N.C., Shi, S., & Wu, C-I. (2018) Speciation with gene flow via cycles of isolation and migration: Insights from multiple mangrove taxa. Molecular Biology & Genetics. 
  20. Howley, C., Devlin, M., & Burford, M. (2018) Assessment of water quality from the Normanby River catchment to coastal flood plumes on the northern Great Barrier Reef, Australia. Marine and Freshwater Research 69, 859-873. doi: 10.1071/MF17009.
  21. Jones, B.L., Unsworth, R.K.F., McKenzie, L.J., Yoshida, R.L. Cullen-Unsworth, L.C. (2018) Crowdsourcing conservation: The role of citizen science in securing a future for seagrass.  Marine Pollution Bulletin 134, 210-215. doi: 10.1016/j.marpolbul.2017.11.005.
  22. Kelly, E., Martin, P.A.J., Gibson-Kueh, S., Morgan, D.L., Ebner, B.C., Donaldson, J., Buller, N., Crook, D.A., Brooks, S., Davis, A.M., Hammer, M.P., Foyle, L., Hair, S., & Lymbery, A.J. (2018) First detection of Edwardsiella ictaluri (Proteobacteria: Enterobacteriaceae) in wild Australian catfish. Journal of Fish Diseases 41, 199-208. doi: 10.1111/jfd.12696.
  23. Kihwele, E., Muse, E., Magomba, E., Mnaya, B., Nassoro, A., Banga, P., Murashani, E., Irmamasita, D., Kiwango, H., Birkett, C., Wolanski, E. (2018) Restoring the perennial Great Ruaha River using ecohydrology, engineering and governance methods in Tanzania. Ecohydrology & Hydrobiology 18, 120-129. doi: 10.1016.j.ecohyd.2017.10.008.
  24. Kiwango, H., Njau, K.N., Wolanski, E. (2018) The application of nutrient budget models to determine the ecosystem health of the Wami Estuary, Tanzania. Ecohydrology & Hydrobiology 18, 107-119. doi: 10.1016/j.ecohyd.2017.10.002.
  25. Kuhnert, P.M., Pagendam, D.E., Bartley, R., Gladish, D.W., Lewis, S.E., & Bainbridge, Z.T. (2018) Making management decisions in the face of uncertainty: A case study using the Burdekin catchment in the Great Barrier Reef. Marine and Freshwater Research 69(8), 1187-1200. doi: 10.1071/MF17237.
  26. Lewis, S.E., Lough, J.M., Cantin, N.E., Matson, E.G., Kinsley, L., Bainbridge, Z.T., & Brodie, J.E. (2018) A critical evaluation of coral Ba/Ca, Mn/Ca and Y/Ca ratios as indicators of terrestrial input: New data from the Great Barrier Reef, Australia. Science Direct 237, 121-154. doi: 10.1016/j.gca.2018.06.017.
  27. Li, Y., Wolanski, E., Dai, Z., Lambrechts, J., Tang. C., Zhang, H. (2018) Trapping of plastics in semi-enclosed seas: Insights from the Bohai Sea, China. Marine Pollution Bulletin 137, 509-517. doi: 10.1016/j.marpolbul.2018.10.038.
  28. McLeod, I., Purandare, J., Gillies, C., Smith, A., & Burrows, D. (2018) Symposium Report: Inaugural Australian Coastal Restoration Symposium. Ecological Management & Restoration 19(1). doi: 10.1111.emr.12289.
  29. McLeod, I., Schmider, J., Creighton, C., & Gillies, C. (2018) Seven pearls of wisdom: Advice from Traditional Owners to improve engagement of local Indigenous people in shellfish ecosystem restoration. Ecological Management & Restoration 19(2). doi: 10.1111/emr.12318.
  30. Nasar, M.D., Davie, P.J.F., & Waltham, N.J. (2018) Redescription of Austrothelphusa wasselli (Bishop, 1963) (Crustacea: Brachyura: Gecarcinuciadae), and designation of a new species from the Gilbert River, north Queensland, Australia. Zootaxa 1, 109-127. doi: 10.11646/zootaxa.4369.1.6.
  31. Novic, A.J., Ort, C., O’Brien, D.S., Lewis, S.E., Davis, A.M., & Mueller, J.F. (2018) Understanding the uncertainty of estimating herbicide and nutrient mass loads in a flood event with guidance on estimator selection. Water Research 132, 99-110. doi: 10.1016/j.watres.2017.12.055.
  32. Ortiz, J., Wolff, N.H., Anthony, K.R.N., Devlin, M., Lewis, S., & Mumby, P.J. (2018) Impaired recovery of the Great Barry Reef under cumulative stress. Science Advances 4:eaar6127. doi: 10.1126/sciadv.aar6127.
  33. Petus, C., Devlin, M., Da Silva, E.T., Lewis, S., Waterhouse, J., Wenger, A., Bainbridge, Z., & Tracey, D. (2018) Defining wet season water quality target concentrations for ecosystem conservation using empirical light attenuation models: A case study in the Great Barrier Reef (Australia). Journal of Environmental Management 213, 451-466. doi: 10.1016/j.jenvman.2018.02.028.
  34. Ryan, E.J., Smithers, S.G., Lewis, S.E., Clark, T.R., & Zhao, J.-X. (2018) The variable influences of sea level, sedimentation and exposure on Holocene Reef development over the cross-shelf transect, central Great Barrier Reef. Diversity. doi: 10.3390/d10040110.
  35. Ryan, E.J., Smithers, S.G., Lewis, S.E., Clark, T.R., Zhao, J.-X, Hua, Q. (2018) Fringing reef growth over a shallow last interglacial reef foundation at a mid-shelf high island: Holbourne Island, central Great Barrier Reef. Marine Geology 398, 137-150. doi: 10.1016/j.margeo.2017.12.007.
  36. Schlaefer, J.A., Wolanski, E., Lambrechts, J., & Kingsford, M.J. (2018) Wind conditions on the Great Barrier Reef influenced the recruitment of snapper (Lutjanus carponotatus). Frontiers in Marine Science 5(193). doi: 10.3389/fmars.2018.00193.
  37. Schlaefer, J.A., Wolanski, E., & Kingsford, M.J. (2018) Swimming behaviour can maintain localised jellyfish (Chrionex fleckeri: Cubozoa) populations. Marine Ecology Progress Series 591, 287-302. doi: 10.3354.meps12305.
  38. Schlaefer, J.A., Wolanski, E., Lambrechts, J., & Kingsford, M.J. (2018) Wind conditions on the Great Barrier Reef influenced the recruitment of snapper (Lutjanus carponotatus). Frontiers in Marine Science 5(193). doi: 10.3389/fmars.2018.00193.
  39. Schrameyer, V., York, P.H., Chartrand, K., Ralph, P.J., Kuhl, M., Brodersen, K.E., & Rasheed, M.A. (2018) Contrasting impacts of light reduction on sediment biogeochemistry in deep- and shallow-water tropical seagrass assemblages (Green Island, Great Barrier Reef).Marine Environmental Research 136, 38-47. doi: 10.1016/j.marenvres.2018.02.008.
  40. Scott, A.L., York, P.H., Duncan, C., Macreadie, P.I., Connolly, R.M., Ellis, M.T., Jarvis, J.C., Jinks, K.I., Marsh, H., & Rasheed, M.A.(2018) The role of herbivory in structuring tropical seagrass ecosystem service delivery. Frontiers in Plant Science 9(127), 1-10. doi: 10.3389/fpls.2018.00127.
  41. Smith, T.M., York, P.H., Broitman, B.R., Thiel, M., Hays, G.C., van Sebille, E., Putman, N.F., Macreadie, P.I., & Sherman, C.D.H. (2018) Rare long-distance dispersal of a marine angiosperm across the Pacific Ocean. Global Ecology and Biogeography 27, 487-496. doi: 10.1111.geb.12713.
  42. Unsworth, R,K.F., McKenzie, L.J., Collier, C.J., Cullen-Unsworth, L.C., Duarte, C.M., Eklof, J.S., Jarvis, J.C., Jones, B.L., Nordlund, L.M. (2018) Global challenges for seagrass conservation. Ambio. doi: 10.1007/s13280-018-1115-y.
  43. Unsworth, R.K.F., McKenzie, L.J., Nordlund, L.M., Cullen-Unsworth, L.C. (2018) A changing climate for seagrass conservation? Current Biology 28, R1229-R1232. doi: 10.1016/j.cub.2018.09.027.
  44. Waltham, N.J., & Dafforn, K.A. (2018) Ecological engineering in the coastal seascape. Ecological Engineering120, 554-559. doi: 10.1016/j.ecoleng.2018.07.028.
  45. Waltham, N.J., & Schaffer, J.R., (2018) Thermal and asphyxia exposure risk to freshwater fish in feral-pig-damaged tropical wetlands. Journal of Fish Biology 93, 723-728. doi: 10.1111.jfb.13742.
  46. Waltham, N.J., Schaffer, J., Buist, J., Geyle, M., & Toby, D. (2018) Working with land and sea rangers to tackle tropical wetland restoration and conservation on the north-western islands, Torres Straits, Australia. Wetlands Ecology & Management. doi: 10.1007/s11273-018-9637-4.
  47. Wildermann N.E., Gredzens, C., Avens, L., Barrios-Garrido, H.A., Bell, I., Blumenthal, J., Bolten, A.B., McNeill, J.B., Casale, P., Di Domenico, M., Domit, C., Epperly, S.P., Godfrey, M.H., Godley, B.J., González- Carman, V., Hamann, M., Hart, K.M., Ishihara, T., Mansfield,  K.L., Metz, T.L., Miller, J.D., Pilcher,  N.J., Read, M.A., Sasso, C., Seminoff, J.A., Seney, E.E., Southwood Williard, A., Tomás, J., Vélez-Rubio, G.M., Ware, M., Williams, J.L., Wyneken, J., Fuentes, M.M.P.B* (2018) Informing research priorities for immature sea turtles through expert elicitation. Endangered Species Research 37, 55-76
  48. Williams A.N., Ulm. S., Sapienza, T., Lewis, S., & Turney, C.S.M. (2018) Sea-level change and demography during the last glacial termination and early Holocene across the Australian continent. Quaternary Science Reviews 182, 144-154. doi: 10.1016/j.quascirev.2017.11.030.
  49. Wolff, N.H., da Silva, E.T., Devlin, M., Anthony, K.R.N., Lewis, S., Tonin, H., Brinkman, R., & Mumby, P.J. (2018) Contribution of individual rivers to Great Barrier Reef nitrogen exposure with implications for management prioritization. Marine Pollution Bulletin 133, 30-43. doi: 10.1016/j.marpolbut.2018.04.069.
  50. Wu, P.P.Y., McMahon, K., Rasheed, M.A., Kendrick, G.A., York, P.H., Chartrand, K., Caley, M.J., & Mengersen, K. (2018) Managing seagrass resilience under cumulative dredging affecting light: Predicting risk using dynamic Bayesian networks. Journal of Applied Ecology55, 1339-1350. doi: 10.1111/1365-2664.13037.
  51. York, P.H., Macreadie, P.I., & Rasheed, M.A. (2018) Blue carbon stocks of Great Barrier Reef deep-water seagrasses. Biology Letters 14, 20180529. doi: 10.1098/rsbl.2018.0529.
  52. York, P.H., Macreadie, P.E., & Rasheed, M.A. (2018) Correction to ‘Blue carbon stocks of Great Barrier Reef deep-water seagrasses’. Biology Letters 16, 20190784. doi: 10.1098/rsbl.2019.0784.
  53. Zalewski, M., Fazi, S., Wolanski, E. (2018) Ecohydrology for water, biodiversity, ecosystem services, and resilience in Africa. Ecohydrology & Hydrobiology 18, 93-95. doi: 10.1016/j.ecohyd.2018.03.001.


  1. Adams, M.P., Collier, C.J., Uthicke, S., Ow, YX., Langois, L., & O’Brien, K.R. (2017) Model fit versus biological relevance: Evaluation photosynthesis-temperature models for three tropical seagrass species. Scientific Reports 7: 39930. doi: 10.1038/srep39930.
  2. Albert, S., Saunders, M.I., Roelfsema, C.M., Leon, J.X., Johnstone, E., Mackenzie, J.R., Hoegh-Guldberg, O., Grinham, A.R., Phinn, S.R., Duke, N.C., Mumby, P.J., Kovacs, E., & Woodroffe, C.D. (2017) Winners and losers as mangrove, coral and seagrass ecosystems respond to sea-level rise in Solomon Islands. Environmental Research Letters 12, 094009. doi: 10.1088/1748.9326/aa7e68.
  3. Balladares, C., Marin, E., Espinoza-Rodriguez, N.E., Barrios-Garrido, H. (2017) Prevalence of fibropapillomatosis on stranded sea turtles in the Venezuelan coast. Revista Bio Ciencias 4(4), 1-14. doi: 10.15741/revbio.04.04.02.
  4. Barrios-Garrido, H., Bolivar, J., Benavides, L., Viloria, J., Dugarte, F., Wildermann, N. (2017) Evaluation of the artisanal longline fishery and its effect in the Longnose stingray (Dasyatis guttata) in Zapara Island-Gulf of Venezuela. Latin American Journal of Aquatic Research45(2), 302-310. doi: 10.3856/vol45-issue2-fulltext-6.
  5. Barrios-Garrido, H., Espinoza-Rodriguez, N., Rojas-Canizales, D., Palmar, J., Wildermann, N., Montiel-Villalobos, M.G., Hamann, M. (2017) Trade of marine turtles along the southwestern coast of the Gulf of Venezuela. Marine Biodiversity Records 05/2017, 10-15. doi: 10.1186/s41200.017-0115-0.
  6. Beatty, S., Allen, M., Lymbery, A., Jordaan, M.S., Morgan, D., Impson, D., Marr, S., Ebner, B., & Weyl, O.L.F. (2017) Rethinking refuges: Implications of climate change for dam busting. Biological Conservation 209, 188-195. doi: 10.1016/j.biocon.2017.02.007.
  7. Beatty, S.J., Allen, M.G., Whitty, J.M., Lymbery, A.J., Keleher, J.J., Tweedley, J.R., Ebner, B.C., & Morgan, D.L. (2017) First evidence of spawning migration by goldfish (Carassius auratus); implications for control of a globally invasive species. Ecology of Freshwater Fish 26, 444-455. doi: 10.1111.eff.12288.
  8. Bejannin, S., van Beek, P., Stieglitz, T., Souhaut, M., & Tamborski, J. (2017) Combining airborne thermal infrared images and radium isotopes to study submarine groundwater discharge along the French Mediterranean coastline. Journal of Hydrology: Regional Studies 13, 72-90. doi: 10.1016/j.ejrh.2017.08.001.
  9. Berry, K.L.E., Hoogenboom, M.O., Brinkman, D.L., Burns, K.A., & Negri, A.P. (2017) Effects of coal contamination on early life history processes of a reef-bulding coral, Acropora tenuisMarine Pollution Bulletin 114, 505-514. doi: 10.1016/j.marpolbul.2016.10.011.
  10. Bradley, M., Baker, R., & Sheaves, M. (2017) Hidden components in tropical seascapes: Deep-estuary habitats support unique fish assemblages. Estuaries and Coasts 40, 1195-1206. doi: 10.1007/s12237-016-0192-z.
  11. Brodersen, K.E., Hammer, K.J., Schrameyer, V., Floytrup, A., Rasheed, M.A., Ralph, P.J., Kuhl, M., & Pedersen, O. (2017) Sediment resuspension and deposition on seagrass leaves impedes internal plant aeration and promotes phytotoxic H2S intrusion. Frontiers in Plant Science 8(657), 1-13. doi: 10.3389/fpls.2017.00657.
  12. Brodie, J., Devlin, M., & Lewis, S. (2017) Potential enhanced survivorship of Crown of Thorns Starfish larvae due to near-annual nutrient enrichment during secondary outbreaks on the central mid-shelf of the Great Barrier Reef, Australia. Diversity 9 17, 1-14. doi: 10.3390/d9010017.
  13. Brodie, J.E., Lewis, S.E., Collier, C.J., Wooldridge, S., Bainbridge, Z.T., Waterhouse, J., Rasheed, M.A., Honchin, C., Holmes, G., & Fabricius, K. (2017) Setting ecologically relevant targets for river pollutant loads to meet marine water quality requirements for the Great Barrier Reef, Australia: A preliminary methodology and analysis. Ocean & Coastal Management 143, 136-147. doi: 10.1016/j.ocecoaman.2016.09.028.
  14. Buckland, A., Baker, R., Loneragan, N., Sheaves, M. (2017) Standardising fish stomach content analysis: The importance of prey condition. Fisheries Research 196, 126-140. doi: 10.1016/j.fishres.2017.08.003.
  15. Buelow, C.A., Baker, R., Reside, A,E., Sheaves, M. (2017) Spatial dynamics of coastal forest bird assemblages: the influence of landscape context, forest type, and structural connectivity. Landscape Ecology 32, 547-561. doi: 10.1007/s10980/016-0461-z.
  16. Canning, A.D., & Death, R.G. (2017) Tropic cascade direction and flow determine network flow stability. Ecological Modelling 355, 18-23. doi: 10.1016/j.ecolmodel.2017.03.020.
  17. Carter, A.B., Davies, C.R., Emslie, M.J., Mapstone, B.D., Russ, G.R., Tobin, A.J., & Williams, A.J. (2017) Reproductive benefits of no-take marine reserves vary with region for an exploited coral reef fish. Scientific Reports 7:9693, 1-12. doi: 10.1038/s41598-017-10180-w.
  18. Chidambarampadmavathy, K., Karthikeyan, O.P., Huerlimann, R., Maes, G.E., & Heimann, K. (2017) Response of mixed methanatrophic consortia to different methane to oxygen ratios. Waste Management 61, 220.228. doi: 10.1016/j.wasman.2016.11.007.
  19. Clarke, D.A., York, P.H., Rasheed, M.A., & Northfield, T.D. (2017) Does biodiversity-ecosystem function literature neglect tropical ecosystems? Trends in Ecology & Evolution 32(5), 320-323. doi: 10.1016/j.tree.2017.02.012.
  20. Clarke, D.A., York, P.H., Rasheed, M.A., & Northfield, T.D., (2017) Identifying areas of need in tropical research: A reply to Stroud and Feeley. Trends in Ecology & Evolution 32, 628. doi: 10.1016/j.tree.2017.06.007.
  21. Collier, C.J., Ow. Y.X., Langlois, L., Uthicke, S., Johansson, C.L., O’Brien, K.R., Hrebien, V., & Adams, M.P. (2017) Optimum temperatures for net primary productivity of three tropical seagrass species. Frontiers in Plant Science 8, 1-14. doi: 10.3389/fpls.2017.01446.
  22. Cook, B.D., Adams, M., Unmack, P.J., Burrows, D., Pusey, B.J., Perna, C., & Hughes, J.M. (2017) Phylogeography of the mouth-brooding freshwater fish Glossamia aprion (Apogonidae) in northern and eastern Australia: historical biogeography and allopatric speciation.Biological Journal of the Linnean Society, 1-16. doi: 10.1093/biolinnean/blx035.
  23. Cooper, M., Lewis, S.E., & Smithers, S.G. (2017) Spatial and temporal dynamics of suspended sediment causing persistent turbidity in a large reservoir: Lake Dalrymple, Queensland, Australia. CSIRO Publishing 68, 1377-1390. doi: 10.1071/MF16316.
  24. Cousins, S., Kennard, M.J., & Ebner, B.C. (2017) Depth-related composition and structuring of tropical riverine fish assemblages revealed by baited video. Marine and Freshwater Research 68, 1965-1975. doi: 10.1071/MF16278.
  25. Cumming, E., Jarvis, J.C., Sherman, C.D.H., York, P.H., & Smith, T.M. (2017) Seed germination in a southern Australian temperate seagrass. PeerJ. doi: 10.7717/peerj.3114.
  26. Davis, A.M., & Betancur-R, R. (2017) Widespread ecomorphological convergence in multiple fish families spanning the marine-freshwater interface. The Royal Society Publishing 284. doi: 10.1098.rspb.2017.0565.
  27. Delandmeter, P., Lambrechts, J., Marmorino, G.O., Legat, V., Wolanski, E., Remacle, J-F., Chen, W., & Deleersnijder, E. (2017) Submesoscale tidal eddies in the wake of coral islands and reefs: satellite data and numerical modelling. Ocean Dynamics, 1-17. doi: 10.1007/s10236-017-10066/z.
  28. Dubuc, A., Waltham, N., Malerba, M., & Sheaves, M. (2017) Extreme dissolved oxygen variability in urbanised tropical wetlands: The need for detailed monitoring to project nursery gound values. Estuarine, Coastal and Shelf Science 198, 63-171. doi: 10.1016/j.ecss.2017.09.014.
  29. Duke, N. (2017) Climate calamity along Australia’s gulf coast. Landscape Architecture Australia, February 2017, 66-71.
  30. Duke, N. (2017) Love at low tide. Why mangroves deserve our admiration. Blood-hungry biting bugs. Flesh-craving crocs. Oozy, smelly mud. Rotten, decaying detritus and slime. Wildlife Australia, Wildlife Preservation Society of Queensland 54, 29-33.
  31. Duke, N.C., Kovacs, J.M., Griffiths, A.D., Preece, L., Hill, D.J.E., van Oosterzee, P., Mackenzie, J., Morning, H.S., & Burrows, D. (2017) Large-scale dieback of mangroves in Australia’s Gulf of Carpentaria: a severe ecosystem response, coincidental with an unusually extreme weather event. Marine and Freshwater Research. doi: 10.1071/MF16322.
  32. Dunbar, K., Baker, R., & Sheaves, M. (2017) Effects of forest width on fish use of fringing mangroves in a highly urbanised tropical estuary. Marine and Freshwater Research 68, 1764-1770. doi: 10.1071/MF16098.
  33. Dunn, R.J.K., Waltham, N.J., Teasdale, P.R., Robertson, D., & Welsh, D.T. (2017) Short-term nitrogen and phosphorus release during the disturbance of surface sediments: A case study in an urbanised estuarine system [Gold Coast Broadwater, Australia]. Journal of Marine Science and Engineering 5(2) 16. doi: 10.3390/jmse5020016.
  34. Ebner, B.C. (2017) Growth,  maximum daily ration and intraspecific cohabitation of the moray Gymnothorax polyuranodon (Muraenidae) in a freshwater aquarium. Cybium 41(2), 93-99.
  35. Ebner, B.C., Donaldson, J.D., Allen, G., & Keith, P. (2017) Testing an underwater video network and first record of Sicyopterus cynocephalus in Australia. Cybium 41, 117-125.
  36. Ebner, B.C., Donaldson, J.A., Allen, G.R., & Keith, P. (2017) Visual census, photographic records and the trial of a video network provide first evidence of the elusive Sicyopterus cynocephalus in Australia. Cybium 2017 41(2), 117-125.
  37. Fraser, M.W., Short, J., Kendrick G., McLean, D., Keesing, J., Byrne, M., Caley, M., Clarke, D., Davies, A.R., Erftemeijer, P.L.A., Field, S., Gustin-Craig, S., Huisman, J., Keough, M., Lavery, P.S., Masini, R., McMahon, K., Mengersen, K., Rasheed, M., Statton, J., Stoddart, J., & Wu, P. (2017) Effects of dredging on critical ecological processes for marine invertebrates, seagrasses and macroalgae, and the potential for management with environmental windows using Western Australian as a case study. Ecological Indicators 78, 229-242. doi: 10.1016/j.ecolind.2017.03.026.
  38. Hazel, J., & Venables, B. (2017) Can island specialists succeed as urban pioneers? Pied imperial-pigeons provide a case study. Wildlife Research 44, 40-47. doi: 10.1071/WR16146.
  39. Heindler, F.M., Alajmi, F., Huerlimann, R., Zeng, C., Newman, S.J., Vamvounis, G., & van Herwerden, L. (2017) Toxic effects of polyethylene terephthalate microparticles and Di(2-ethylhexyl)phthalate on the calanoid copepod, Parvocalanus crassirostris.Ecotoxicology and Environmental Safety 141, 298-305. doi: 10.1016/j.ecoenv.2017.03.029.
  40. Huveneers, C., Stehfest, K.M., Simpfendorfer, C.A., Semmens, J., Hobday, A.J., Pederson, H., Stieglitz, T., Vallee, R., Webber, D., Heupel, M.R., & Harcourt, R. (2017) Application of the acoustic propagation model to a deep-water cross-shelf curtain. Methods in Ecology and Evolution 8, 1305-1308. doi: 10.1111/2041-210X.12806.
  41. James, C.S., Reside, A.E., VanDerWal, J., Pearson, R.G., Burrows, D., Capon, S.J., Harwood, T.D., Hodgson, L., & Waltham, N.J.(2017) Sink or swim? Potential for high faunal turnover in Australian rivers under climate change. Journal for Biogegraphy. doi: 10.1111/jbi.12926.
  42. Li, Y., Martins, F., & Wolanski, E. (2017) Sensitivity analysis of the physical dynamics of the Fly River plume in Torres Strait. Estuarine, Coastal and Shelf Science 194, 84-91. doi: 10.1016/j.ecss.2017.06.006.
  43. Mattone, C., & Sheaves, M. (2017) Patterns, drivers and implications of dissolved oxygen dynamics in tropical mangrove forests. Estuarine, Coastal and Shelf Science 197, 205-213. doi: 10.1016/j.ecss.2017.08.028.
  44. Mnaya, B., Mtahiko, M., Wolanski, E. (2017) The Serengeti will die if Kenya dams the Mara River. Oryx 51(4), 581-583. doi: 10.1017/S0030605317001338.
  45. Morgan, D.L., Ebner, B.C., Allen, M.G., Gleiss, A.C., Beatty, S.J., & Whitty, J.M. (2017) Habitat use and site fidelity of neonate and juvenile green sawfish Pristis zijsron in a nursery area in Western Australia. Endangered Species Research 34, 235-249. doi: 10.3354/esr00847.
  46. Munksgaard, N.C., Burchert, S., Kaestli, M., Nowland, S.J., O’Connor, W., & Gibb, K.S. (2017) Cadmium uptake and zinc-cadmium antagonism in Australian tropical rock oysters: Potential solutions for oyster aquaculture enterprises. Marine Pollution Bulletin 123, 47-56. doi: 10.1016/j.marpolbul.2017.09.031.
  47. Novic, A.J., O’Brien, D.S., Kaserzon, S.L., Hawker, D.W., Lewis, S.E., & Mueller, J.F. (2017) Monitoring herbicide concentrations and loads during a flood event: A comparison of grab sampling with passive sampling. Environmental Science & Technology 51, 3880-3891. doi: 10.1021.acs.est.6b02858.
  48. O’Brien, K.R., Waycott, M., Maxwell, P., Kendrick, G.A., Udy, J.W., Ferguson, A.J.P., Kilminster, K., Scanes, P., McKenzie, L.J., McMahon, K., Adams, M.P., Samper-Villarreal, J., Collier, C., Lyons, M., Mumby, P.J., Radke, L., Christianen, J.A., & Dennison, W.C. (In press) Seagrass ecosystem trajectory depends on the relative timescales of resistance, recovery and disturbance. Marine Pollution Bulletin, doi: 10.1016/j.marpolbul.2017,09.006.
  49. Pearson, R.G., Christidis, F., Connolly, N.M., Nolen, J.A., St Clair, R.M., Cairns, A., & Davis, L. (2017) Stream macroinvertebrate assemblage uniformity and drivers in a tropical bioregion. Freshwater Biology 62, 544-558. doi: 10.1111/fwb.12884.
  50. Petit, G.P., Wildermann, N., Barrios-Garrido, H. (2017) Comunidades de macroinvertebrados asociadas a piscinas de marea del litoral rocoso Punta Perret, estado Zulia, Venezuela. Ciencia 25(1), 15-28.
  51. Phinn, S.R., Kovacs, E.M., Roelfsema, C.M., Canto, R.F., Collier, C.J., & McKenzie, L.J. (2017) Assessing the potential for satellite image monitoring of seagrass thermal dynamics: for inter- and shallow sub-tidal seagrasses in the inshore Great Barrier Reef World Heritage Area, Australia. International Journal of Digital Earth, 1-23. doi: 10.1080.17538947.2017.1359343.
  52. Pusey, B.J., Burrows, D.W., Kennard, M.J., Perna, C.N., Unmack, P.J., Allsop, Q., & Hammer, M.P. (2017) Freshwater fishes of northern Australia. Zootaxa 4253(1), 001-104. doi: 10.11646/zootaxa.4253.1.1.
  53. Rodellas, V., Garcia-Orellana, J., Trezzi, G., Masque, P., Stieglitz, T.C., Bokuniewicz, H., Cochran, J.K., & Berdalet, E. (2017) Using the radium quartet to quantify submarine groundwater discharge and porewater exchange. Science Direct, 196, 58-73. doi: 10.1016/j.gca.2016.09.016.
  54. Rowan, D.J., Templeman, M.A., & Kingsford, M.J. (2017) Herbicide effects on the growth and photosynthetic efficiency of Cassiopea maremetensChemsophere 183, 143-148. doi: 10.1016/j.chemosphere.2017.05.001.
  55. Salmo III, S.G., Tibbetts, I., & Duke, N.C. (2017) Colonization and shift of mollusc assemblages as a restoration indicator in planted mangroves in the Phillippines. Biodiversity and Conservation 26, 865-881. doi: 10.1007/s10531-016-1276-6.
  56. Salmo III, S.G., Tibbetts, I.R., & Duke, N.C. (2017) Nekton communities as indicators of habitat functionality in Philippine mangrove plantations. Marine and Freshwater Research. doi: 10.1071/MF17116.
  57. Schmidt, K., Blanchette, M.L., Pearson, R.G., Alford, R.A. & Davis, A.M. (2017) Trophic roles of tadpoles in tropical Australian streams.Freshwater Biology 62, 1929-1941. doi: 10.1111/fwb.13036.
  58. Sheaves, M., Baker, R., Abrantes, K.G., & Connolly, R.M. (2017) Fish biomass in tropical estuaries: Substantial variation in food web structure, sources of nutrition and ecosystem-supporting processes. Estuaries and Coasts 40, 580-593. doi: 10.1007/s12237-016-0159-0.
  59. Shen, H., Leblanc, M., Frappart, F., Seoane, L., O’Grady, D., Olioso, A., & Tweed, S. (2017) A comparative study of GRACE with continental evapotranspiration estimates in Australian semi-arid and arid basins: Sensitivity to climate variability and extremes. Water9(614), 1-09. doi: 10.3390/w9090614.
  60. Shimada, T., Limpus, C., Jones, R., Hamann, M. (2017) Aligning habitat use with management zoning to reduce vessel strike of sea turtles. Ocean & Coastal Management 142, 163-172. doi: 10.1016/j.ocecoaman.2017.03.028.
  61. Souza, C.A., Murphy, N., Villacorta-Rath, C., Woodings, L.N., Ilyushkina, I., Hernandez, C.E., Green, B.S., Bell, J.J., & Strugnell, J.M. (2017) Efficiency of ddRAD target enriched sequencing across spiny rock lobster species (Palinuridae: Jasus). Scientific Reports 7:6781. doi: 10.1038/s41598-017-06582-5.
  62. Spies, R.B., Mukhtasor, M., & Burns, K.A. (2017) The Montara oil spill: A 2009 well blowout in the Timor Sea. Archives of Environmental Contamination and Toxicology, 1-8. doi: 10.1007/s00244-016-0356-7.
  63. Stieglitz, T.C., & Dujon, A.M. (2017) A groundwater-fed coastal inlet as habitat for the Carribbean queen conch Lobatus gigas – an acoustic telemetry and space use analysisMarine Ecology Progress Series 571, 139-152. doi: 10.3354/meps12123.
  64. Su, N. (2017) The fractional Boussinesq equation of groundwater flow and its applicationsJournal of Hydrology, 547, 403-412.
  65. Su, N. (2017) Quantifying anomalous coastal processes with fractional calculus-based models. Editorial. International Journal of Marine Science and Ocean Technology, 4(1e), 1-2.
  66. Su, N. (2017) Exact and approximate solutions of fractional partial differential equations for water movement in soilsHydrology, 4(1), article 8.
  67. Tol, S.J., Jarvis, J.C., York, P.H., Grech, A., Congdon, B.C., & Coles, R.G. (2017) Long distance biotic dispersal of tropical seagrass seeds by marine mega-herbivores. Scientific Reports 7: 4458. doi: 10.1038/s41598-017-04421-1.
  68. Villacorta-Rath, C., Souza, C.A., Murphy, N.P., Green, B.S., Gardner, C., & Strugnell, J.M. (2017) Temporal genetic patterns of diversity and structure evidence chaotic genetic patchiness in a spiny lobster. Molecular Ecology 27, 54-65. doi: 10.1111/mec.14427.
  69. Wallace, J., Waltham, N., Burrows, D. (2017) A comparison of temperature regimes in dry-season waterholes in the Flinders and Gilbert catchment in northern Australia. Marine and Freshwater Research 68, 650-667. doi: 10.1071/MF15468.
  70. Waltham, N.J., & Fixler, S. (2017) Aerial herbicide spray to control invasive water hyacinth (Eichhornia crassipes): Water quality concerns fronting fish occupying a tropical floodplain wetland. Tropical Conservation Science 10, 1-10. doi: 10.1177/1940082917741592.
  71. Waltham, N.J., & Sheaves, M. (2017) Acute thermal tolerance of tropical estuarine fish occupying a man-made tidal lake, and increased exposure risk with climage change. Estuarine, Coastal and Shelf Science 196, 173-181. doi: 10.1016/j.ecss.2017.06.032.
  72. Warnakulasooriya, K.N., Butler, E.C.V., Gibb, K.S., & Munksgaard, N.C. (2017) Staple isotopes in biota reflect the graduated influence of sewage effluent along a tropical macro-tidal creek. Marine and Freshwater Research 68, 1855-1866. doi: 10.1071/MF16080.
  73. Wegscheidl, C.J., Sheaves, M., McLeod, I.M., Hedge, P.T., Gillies, C.L., & Creighton, C. (2017) Sustainable management of Australia’s coastal seascapes: a case for collecting and communicating quantitative evidence to inform decision-making. Wetland Ecology and Management 25, 3-22. doi: 10.1007/s11273-016-9515-x.
  74. Welsh, S.A., Jerry, D.R., Burrows, D.W., & Rourke, M.L. (2017) A new species of freshwater eel-tailed catfish of the Genus Tandanus(Teleostei: Plotosidae) from coastal rivers of mid-northern New South Wales, Australia. Copeia 105(2), 229-236. doi: 10.1643/CI-16-547.
  75. Wildermann, N., Critchell, K., Fuentes, M.M.P.B., Limpus, C.J., Wolanski, E., & Hamann, M. (2017) Does behaviour affect the dispersal of flatback post-hatchlings in the Great Barrier Reef. Royal Society Open Science 4:170164. doi: 10.1098/rsos.170164.
  76. Wilkinson, A.D., Collier, C.J., Flores, F., Langlois, L., Ralph, P.J., & Negri, A.R. (2017) Combined effects of temperature and the herbicide diuron on Photosystem II activity of the tropical seagrass Halophila ovalisScientific Reports 7:45404. doi: 10.1038/srep45404.
  77. Whitty, J.M., Keleher, J., Ebner, B.C., Gleiss, A.C., Simpfendorfer, C.A., & Morgan, D.L. (2017) Habitat use of a critically endangered elasmobranch, the largetooth sawfish Pristis pristis, in an intermittently flowing riverine nursery. Endangered Species Research 34, 211-227. doi: 10.3354/esr00837.
  78. Wolanski, E. (2017) Bounded and unbounded boundaries – Untangling mechanisms for estuarine-marine ecological connectivity: Scales of m to 10,000 km – A review. Estuarine, Coastal and Shelf Science 198, 378-392. doi: 10.1016/j.ecss.2016.06.022.
  79. Wolanski, E., Andutta, F., Deleersnijder, E., Li, Y., & Thomas, C.J. (2017) The Gulf of Carpentaria heated Torres Strait and the Northern Great Barrier Reef during the 2016 mass coral bleaching event. Estuarine, Coastal and Shelf Science 194, 172-181. doi: 10.1016.j.ecss.2016.06.018.
  80. Wu, P.P., Mengersen, K., McMahon, K., Kendrick, G.A., Chartrand, K., York. P.H., Rasheed, M.A., & Caley, M.J. (2017) Timing anthropogenic stressors to mitigate their impact on marine ecosystem resilience. Nature Communications 8: 1263. doi: 10.1038/s41467-017-01306-9.
  81. Xu, S., He, S., Zhang, Z., Guo, Z., Guo, W., Lyu, H., Li, J., Yang, M., Du, Z., Huang, Y., Zhou, R., Zhong, C., Boufford, D.E., Lerdau, M., Wu, C-I., Duke, N.C., The International Mangrove Consortium, & Shi, S. (2017) The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole-genome sequencing. National Science Review 4, 721-734. doi: 10.1093/nsr/nwx065.
  82. Yang, Y., Li, J., Yang, S., Li, X., Fang, L., Zhong, C., Duke, N.C., Zhou, R., & Shi, S. (2017) Effects of Pleistocene sea-level fluctuations on mangrove population dynamics: a lesson from Sonneratia albaBMC Evolutionary Biology 17:22. doi: 10.1186/s12862-016-0849-z.
  83. York, P.H., Smith, T.M., Coles, R.G., McKenna, S.A., Connolly, R.M., Irving, A.D., Jackson, E.L., McMahon, K., Runcie, J.W., Sherman, C.D.H., Sullivan, B.K., Trevathan-Tackett, S.M., Brodersen, K.E., Carter, A.B., Ewers, C.J., Lavery, P.S., Roelfsema, C.M., Sinclair, E.A., Strydom, S., Tanner, J.E., van Dijk, K., Warry, F.Y., Waycott, M., & Whitehead, S. (2017) Identifying knowledge gaps in seagrass research and management: An Australian perspective. Marine Environmental Research 127, 163-172. doi: 10.1016/j.marenvres.2016.06.006.


  1. Asaeda, T., Barnuevo, A., Sanjaya, K., Fortes, M.D., Kanesaka, Y., & Wolanski, E. (2016) Mangrove plantation over a limestone reef – Good for the ecology? Estuarine, Coastal and Shelf Science 173, 57-64. doi: 10.1016/j.ecss.2016.02.017.
  2. Aschenbroich, A., Michaud, E., Stieglitz, T., Fromard, F., Gardel, A., Tavares, M., & Thouzeau, G. (2016) Brachyuran crab community structure and associated sediment reworking activities in pioneer and young mangroves of French Guiana, South America. Estuarine, Coastal and Shelf Science 182(A), 60/71. doi: 10.1016.j.ecss.2016.09.003.
  3. Bainbridge, Z., Lewis, S., Smithers, S., Wilkinson, S., Douglas, G., Hillier, S., & Brodie, J. (2016) Clay mineral source tracing and characterisation of Burdekin River (NE Australia) and flood plume fine sediment. Journal of Soils and Sediments 16, 687–706. doi: 10.1007/s11368-015-1282-4.
  4. Baird, M.E., Adams, M.P., Babcock, R.C., Oubelkheir, K., Mongin, M., Wild-Allen, K.A., Skerratt, J., Robson, B.J., Petrou, K., Ralph, P.J., O’Brien, K.R., Carter, A.B., Jarvis, J.C., & Rasheed, M.A. (2016) A biophysical representation of seagrass growth for application in a complex shallow-water biogeochemical model. Ecological Modelling 325, 13-27. doi: 10.1016/j.ecolmodel.2015.12.011.
  5. Barnett, A., Abrantes, K.G., Baker, R., Diedrich, A.S., Farr, M., Kuilboer, A., Mahony, T., McLeod, I., Moscardo, G., Prideaux, M., Stoeckl, N., van Luyn, A. & Sheaves, M. (2016) Sportfisheries, conservation and sustainable livelihoods: a multidisciplinary guide to developing best practice. Fish and Fisheries 17, 696-713. doi: 10.1111/faf.12140.
  6. Barrios-Garrido, H., De Turris-Morales, K., Nash, C.M., Delgado-Ortega, G., & Espinoza-Rodrigues, N. (2016) Acoustic parameters of Guiana Dolphin (Sotalia guianensis) Whistles in the Southern Gulf of Venezuela. Aquatic Mammals 42(2), 127-136. doi: 10.1578/AM.42.2.2016.127.
  7. Barrios-Garrido, H., & Montiel-Villalobos, M.G. (2016) Stranding of leatherback turtles (Dermochelys coriacea) along the western and southern coast of the Gulf of Venezuela. Herpetological Conservation and Biology 11(1), 244-252.
  8. Bird, M.I., O’Grady, D., & Ulm, S. (2016) Humans, water, and the colonization of Australia. PNAS 113(41), 11477-11482. doi: 10.1073/pnas.1608470113.
  9. Bonthu, S., Ganguly, D., Ramachandran, P., Ramachandran, R., Pattnaik, A.K., & Wolanski, E. (2016) Both riverine detritus and dissolved nutrients drive lagoon fisheries. Estuarine, Coastal and Shelf Science 183, 360-369. doi: 10.1016/j.ecss.2016.07.016.
  10. Brodie, J.E., Lewis, S., Wooldridge, S., Bainbridge, Z., Waterhouse, J., Honchin, C., Holmes, G., Fabricius, K., Collier, C., & Rasheed, M. (2016) Setting ecologically relevant targets for river pollutant loads to meet marine water quality requirements for the Great Barrier Reef, Australia: A preliminary methodology and analysis. Ocean and Coastal Management 143, 136-147. doi: 10.1016/j.ocecoanman.2016.09.028. 
  11. Brodie, J., & Pearson, R.C. (2016) Ecosystem health of the Great Barrier Reef: Time for effective management action based on evidence. Estuarine, Coastal and Shelf Science 183, 438-451. doi: 10.1016/j.ecss.2016.05.008.
  12. Buck, A.C.E., Gardiner, N.M., & Bostrom-Einarsson, L. (2016) Citric acid injections: an accessible and efficient method for controlling outbreaks of the crown-of-thorns starfish Acanthaster cf. solaris. Diversity 8(28), 1-12. doi: 10.3390/d8040028.
  13. Burns, K., & Jones, R. (2016) Assessment of sediment hydrocarbon contamination from the 2009 Montara oil blow out in the Timor Sea. Environmental Pollution 211, 214-225. doi: 10.1016/j.envpol.2015.10.012.
  14. Burns, K. (2016) Pollution guidelines leave a blind spot for assessing the impact of coal and oil. The Conservation.
  15. Chaiechi, T., Stoeckl, N., Jarvis, D., Lewis, S., & Brodie, J. (2016) Assessing the impact of price changes and extreme climatic events on sediment loads in a large river catchment near the Great Barrier Reef. The Australian Journal of Agricultural and Resource Economics 59, 1-20. doi: 10.1111/1467-8489.12140.
  16. Chartrand, K.M., Bryant, C.V., Carter, A.B., Ralph, P.J., & Rasheed, M.A. (2016) Light thresholds to prevent dredging impacts on the Great Barrier Reef seagrass, Zostera muelleri ssp. capricorni. Frontiers in Marine Science 3(106). doi: 10.3389/fmars.2016.00106.
  17. Clark, T.R., Leonard, N.D., Zhao, J., Brodie, J., McCook, L.J., Wachenfeld, D.R., Nguyen, A.D., Markham, H.L., & Pandolfi, J.M. (2016) Historical photographs revisited: A case study for dating and characterizing recent loss of coral cover on the inshore Great Barrier Reef. Scientific Reports 6:19285. doi: 10.1038/srep19285.
  18. Clayton, P.D., & Pearson, R.G. (2016) Harsh habitats? Waterfalls and their faunal dynamics in tropical Australia. Hydrobiologia 775, 123-137. doi: 10.1007/s10750-016-2719-5.
  19. Collier, C.J., Adams, M.P., Langlois, L., Waycott, M., O’Brien, K.R., Maxwell, P.S., & McKenzie, L. (2016) Thresholds for morphological response light reduction for four tropical seagrass species. Ecological Indicators 67, 358-366. doi: 10.1016/j.ecolind.2016.02.050.
  20. Connolly, N.M., Pearson, R.G., & Pearson, B.A. (2016) Riparian vegetation and sediment gradients determine invertebrate diversity in streams draining an agricultural landscape. Agriculture, Ecosystems and Environment 221, 163-173.
  21. Cooper, W.E., Kudo, H., & Duke, N.C. (2016) Bruguiera hainesii C.G. Rogers (Rhizophoraceae), an endangered species recently discovered in Australia. Austrobaileya 9(4), 481-488.
  22. Critchell, K., & Lambrechts, J. (2016) Modelling accumulation of marine plastics in the coastal zone; what are the dominant physical processes? Estuarine, Coastal and Shelf Science 171, 111-122. doi: 10.1016/j.ecss.2016.01.036.
  23. Dale, A.P., Vella, K., Pressey, R.L., Brodie, J., Gooch, M., Potts, R., & Eberhard, R. (2016) Risk analysis of the governance system affecting outcomes in the Great Barrier Reef. Journal of Environmental Management 183(3), 712-721. doi: 10.1016/j.jenvman.2016.09.013.
  24. D’Anastasi, B.R., van Herwerden, L., Hobbs, J.A., Simfendorfer, C.A. & Lukoschek, V., (2016) New range and habitat records for threatened Australian sea snakes raise challenges for conservation. Biological Conservation 174, 66-70. doi: 10.1016/j.biocon.2015.11.032.
  25. Datta, B., Durand, F., Laforge, S., Prakash, O., Esfahani, H.K., Chadalavada, S., & Naidu, R. (2016) Preliminary hydrogeologic modeling and optimal monitoring network design for a contaminated abandoned mine site area: Application of developed monitoring network design software. Journal of Water Resource and Protection 8(01), 46. doi: 10.4236/jwarp.2016.81005.
  26. Davis, A.M., Pearson, R.G., Brodie, Butler, B. (2016) Review and conceptual models of agricultural impacts and water quality in tropical and sub-tropical waterways of the Great Barrier Reef catchment area. Marine and Freshwater Research. http://dx.doi.org/10.1071/MF15301.
  27. Davis. A.M., & Pradolin, J. (2016) Precision herbicide application technologies to decrease herbicide losses in furrow irigation outflows in a northeastern Australian cropping system. Journal of Agricultural and Food Chemistry 64(2), 4021-4028. doi: 10.1021/acs.jafc.5b04987.
  28. Davis, A.M., Tink, M., Rohde, K., & Brodie, J. (2016) Urea contributions to dissolved ‘organic’ nitrogen losses from intensive, fertilised agriculture. Agriculture, Ecosystems and Environment 223, 190-196. doi: 10.1016/j.agee.2016.03.006.
  29. Davis, A.M., & Unmack, P.J., Vari, R.P., & Betancur-R, R. (2016) Herbivory promotes dental disparification and macroevolutionary dynamics in grunters (Teleostei: Terapontidae), a freshwater adaptive radiation. The American Naturalist 187(2), 320-333. doi: 10.1086/684747.
  30. Dichmont, C.M., Dutra, L.X.C., Owens, R., Jebreen, E., Thompson, C., Deng, R.A., van Putten, E.I., Pascual, R., Dambacher, J.M., Warne, M.St.J., Quinn, R.H., Thebaud, O., Bennett, J., Read, M., Wachenfeld, D., Davies, J., Garland, A., Dunning, M., Collier, C., Waycott, M. & Playford, J. (2016) A generic method of engagement to elicit regional coastal management options. Ocean & Coastal Mangement 124, 22-32. doi: 10.1016/j.ocecoaman.2016.02.003.
  31. Duke, N. (2016) Oil spill impacts on mangroves: Recommendations for operational planning and action based on a global review. Marine Pollution Bulletin 109, 700-715. doi: 10.1016/j.marpolbul.2016.06.082.
  32. Duke, N. (2016) Oil spill impacts on mangroves – supplementary data.
  33. Dutra, L.X.C., Dichmont, C.M., van Putten, I.E., Thebaud, O., Deng, R.A., Pascual, R., Owens, R., Jebreen, E., Thompson, C., Warne, M.St.J., Quinn, R., Bennett, J., Read, M., Wachenfeld, D., Collier, C., Waycott, M., Davies, J., Garland, A., Dunning, M., & Playford, J. (2016) How important is the coast? A survey of coastal objectives in an Australian regional city. Marine Policy 71, 229-241. doi: 10.1016/j.marpol.2016.05.020.
  34. Ebner, B.C., Donaldson, J.A., Fulton, C.J., & Schaffer, J. (2016) Distinct habitat selection by freshwater morays in tropical rainforest streams. Ecology of Freshwater Fish 25, 329-335. doi: 10.1111.eff.12213.
  35. Ebner, B.C., Morgan, D.L., Kerezsy, A., Hardie, S., Beatty, S.J., Seymour, J.E., Donaldson, J.A., Linke, S., Peverell, S., Roberts, D., Espinoza, T., Marshall, N., Kroon, F.J., Burrows, D.W., & McAllister, R.R.J. (2016) Enhancing conservation of Australian freshwater ecosystems: identification of freshwater flagship fishes and relevant target audiences. Fish and Fisheries 7, 1134-1151. doi: 10.1111/faf.12161.
  36. Elliott, M., Mander, L., Mazik, K., Simenstad, C., Valesini, F., Whitfield, A., & Wolanski, E. (2016) Ecoengineering with ecohydrology: Successes and failures in estuarine restoration. Estuarine, Coastal and Shelf Science 176, 12-35. doi: 10.1016/j.ecss.2016.04.003.
  37. Epstein, H.E., Templeman, M.A., & Kingsford, M.J. (2016) Fine-scale detection of pollutants by a benthic marine jellyfish. Marine Pollution Bulletin 107, 340-346. doi: 10.1016/j.marpolbul.2016.03.027.
  38. Fabricius, K.E., Logan, M., Weeks, S.J., Lewis, S.E., & Brodie, J. (2016) Changes in water clarity in response to river discharges on the Great Barrier Reef continental shelf: 2002-2013. Estuarine, Coastal and Shelf Science 173, A1-A15. doi: 10.1016/j.ecss.2016.03.001.
  39. Farrington, J.W., Burns, K.A., & Leinen, M.S. (2016) Synthesis and crosscutting topics. Oceanography 29(3), 204-213. doi: 10.5670/oceanog.2016.84.
  40. Flores-de-Santiago, F., Kovacs, J.M., Wang, J., Flores-Verdugo, F., Zhang, C., & Gonzalez-Farias, F. (2016) Examining the influence of seasonality, condition and species composition on mangrove leaf pigment contents and laboratory based spectroscopy data. Remote Sensing 8(3), 20. doi: 10.3390/rs8030226.
  41. Furuichi, T., Olley, J., Wilkinson, S., Lewis, S., Bainbridge, Z., & Burton, J. (2016) Paired geochemical tracing and load monitoring analysis for identifying sediment sources in a large catchment draining into the Great Barrier Reef lagoon. Geomorphology 266, 41-52. doi: 10.1016/j.geomorph.2016.05.008.
  42. Gladish, D.W., Kuhnert, P.M., Pagendam, D.E., Wikle, C.K., Bartley, R., Searle, R.D., Ellis, R.J., Dougall, C., Turner, R.D.R., Lewis, S.E., Bainbridge, Z.T., & Brodie, J. (2016) Spatio-temporal assimilation of modelled catchment loads with monitoring data in the Great Barrier Reef.  The Annals of Applied Statistics 10(3), 1590-1618. doi: 10.1214/16-AOAS950.
  43. Godfrey, P.C., Arthington, A.H., Pearson, R.G., Karim, F., & Wallace, J. (2016) Fish larvae and recruitment patterns in floodplain lagoons of the Australian wet tropics. Marine and Freshwater Research. doi: 10.1071/MF15421.
  44. Golbuu, Y., Gouezo, M., Kurihara, H., Rehm, L., & Wolanski, E. (2016) Long-term isolation and local adaptation in Palau’s Nikko Bay help corals thrive in acidic waters. Coral Reefs. doi: 10.1007/s00338-015-1457-5.
  45. Grech, A., Wolter, J., Coles, R., McKenzie, L., Rasheed, M., Thomas, C., Waycott, M., & Hanert, E. (2016) Spatial patterns of seagrass dispersal and settlement. Diversity and Distributions 22, 1150-1162. doi: 10.1111/ddi.12479.
  46. Guo, Z., Huang, Y., Chen, Y., Duke, N.C., Zhong, C., & Shi, S. (2016) Genetic discontinuities in a dominant mangrove Rhizophora apiculata (Rhizophoraceae) in the Indo-Malesian region. Journal of Biogeography. doi: 10.1111/jbi.12770.
  47. Huveneers, C., Simpfendorfer, C.A., Kim, S., Semmens, J.M., Hobday, A.J., Pederson, H., Stieglitz, T., Vallee, R., Webber, D., Heupel, M.R., Peddemors, V., & Harcourt, R.G. (2016) The influence of environmental parameters on the performance and detection range of acoustic receivers. Methods in Ecology and Evolution 7, 825-835. doi: 10.1111.2041-210X.12520.
  48. James, C.S., Mackay, S.J., Arthington, A.H., Capon, S.J., Barnes, A., & Pearson, B. (2016) Does stream flow structure woody riparian vegetation in subtropical catchments? Ecology and Evolution 6(16), 5950-5963. doi: 10.1002/ece3.2249.
  49. Johansson, C.L., Paul, N.A., de Nys, R. and Roberts, D.A. (2016) Simultaneous biosorption of selenium, arsenic and molybdenum with modified algal-based biochars. Journal of Environmental Management 165: 117-123. doi:10.1016/j.jenvman.2015.09.021.
  50. Keith, P., Lord, C., Boseto, D., & Ebner, B.C. (2016) A new species of Lentipes (Gobiidae) from the Solomon Islands. Cybium 40(2), 139-146.
  51. Kelly, E., Gibson-Kueh, S., Ebner, B.C., Donaldson, J.A., Yang, R., Morgan, D.L., Buller, N., Hair, S., & Lymbery, A.J. (2016) Observations on the health of Tandanus tropicanus (Teleostei: Plotosidae) from an Australian river system. Australian Zoologist 38(1), 83-89. doi: 10.7882/AZ.2015.030.
  52. Koci, J., & Nelson, P.N. (2016) Tropical dairy pasture yield and nitrogen cycling: effect of urea application rate and a nitrification inhibitor, DMPP. Crop & Pasture Science. doi: 10.1071/CPI5400.
  53. Lamb, J.B., Wenger, A.S., Devlin, M.J., Ceccarelli, D.M., Williamson, D.H., & Willis, B.L. (2016) Reserves as tools for alleviating impacts of marine disease. Philosophical Transactions of the Royal Society B: Biological Sciences 371(1689), 1-11. doi: 10.1098.rstb.2015.0210.
  54. Le Port, A., Roycroft, E.J., Thakur, V., & Lavery, D.S. (2016) Characterisation of eleven new polymorphic microsatellite markers for the coastal stingray Dasyatis brevicaudata (Dasyatidae Hutton 1875), and cross-amplification in seven dasyatid species. Biochemical Systematics and Ecology 65, 234-237. doi: 10.1016.j.bse.2016.02.009.
  55. Lewis, S.E., Silburn, D.M., Kookana, R.S., & Shaw, M. (2016) Pesticide behaviour, fate, and effects in the tropics: An overview of the current state of knowledge. Journal of Agricultural and Food Chemistry 64, 3917-3924. doi: 10.1021.acs.jafc6b01320.
  56. Li, Z., Duke, N.C., Yang, Y., Huang, L., Zhu, Y., Zhang, Z., Zhou, R., Zhong, C., Huang, Y., & Shi, S. (2016) Re-evaluation of phylogenetic relationships among species of the mangrove genus Avicennia from Indo-West Pacific based on multilocus analyses. PLoS ONE. doi: 10.1371/journal.pone.0164453.
  57. Mackenzie, J.R., Duke, N.C., & Wood, A.L. (2016) The shoreline video assessment method (S-VAM): Using dynamic hyperlapse image acquisition to evaluate shoreline mangrove forest structure, values, degradation and threats. Marine Pollution Bulletin 109(2), 751-763. doi: 10.1016/j.marpolbul.2016.05.069.
  58. Maxwell, A., Capon, S.J., & James, C.S. (2016) Effects of flooding on seedling establishment in two Australian riparian trees with contrasting distributions; Acacia stenophylla A. Cunn. ex Benth. and Casuarina cunninghamiana Miq. Ecohydrology 9(6), 942-949. doi: 10.1002/eco.1691.
  59. Maynard, J.A., Beeden, R., Puotinen, M., Johnson, J.E., Marshall, P., van Hooidonk, R., Heron, S.F., Devlin, M., Lawrey, E., Dryden, J., Ban, N., Wachenfeld, D., & Planes, S. (2016) Great Barrier Reef no-take areas include a range of disturbance regimes. Conservation Letters 9(3), 191-199. doi: 10.1111/conl.12198.
  60. McIntyre, J.K., Edmunds, R.C., Anulacion, B.F., Davis, J.W., Incardona, J.P., Stark, J.D., & Scholz, N.L. (2016) Severe coal tar sealcoat runoff toxicity to fish is prevented by bioretention filtration. Environmental Science & Technology 50, 1570-1578. doi: 10.1021/acs.est.5b04928.
  61. McIntyre, J.K., Edmunds, R.C., Redig, M.G., Mudrock, E.M., Davis, J.W., Incardona, J.P., Stark, J.D., & Scholz, N.L. (2016) Confirmation of stormwater bioretention treatment effectiveness using molecular indicators of cardiovascular toxicity in developing fish. Environmental Science & Technology 50, 1561-1569. doi: 10.1021/acs.est.5b04786.
  62. McKenzie, L.J., Yaakub, S.M., Tan, R., Seymour, J., & Yoshida, R.L. (2016) Seagrass habitats of Singapore: Environmental drivers and key processes. Raffles Bulletin of Zoology 34, 60-77.
  63. McLeod, I.M., & Clark, T.D. (2016) Limited capacity for faster digestion in larval coral reef fish at an elevated temperature. PLOS One, 1-13. doi: 10.1371/journal.pone.0155360.
  64. Morgan, D.L., Wueringer, B.E., Allen, M.G., Ebner, B.C., Whitty, J.M., Gleiss, A.D., & Beatty, S.J. (2016) What is the fate of amputee sawfish? Fisheries 41, 71-73. doi: 10.1080/03632415.2015.1125887.
  65. Munday, P.L., Watson, S., Parsons, D.M., King, A., Barr, N.G., McLeod, I.M., Allan, B.J.M., & Pether, S.M.J. (2016) Effects of elevated CO2 on early life history development of the yellowtail kingfish, Seriola Ialandi, a large pelagic fish. ICES Journal of Marine Science 73(3), 641-649. doi: 10.1093/icesjms/fsv210.
  66. Newton, A., Harff, J., You, Z-J., Zhang, H., & Wolanski, E. (2016) Sustainability of future coasts and estuaries: A synthesis. Estuarine, Coastal and Shelf Science 183, 271-274. doi: 10.1016/j.ecss.2016.11.017.
  67. O’Brien, D., Lewis, S., Davis, A., Gallen, C., Smith, R., Turner, R., Warne, M., Turner, S., Caswell, S., Mueller, J.F., & Brodie, J. (2016) Spatial and temporal variability in pesticide exposure downstream of a heavily irrigated cropping area: Application of different monitoring techniques. Journal of Agricultural and Food Chemistry 64, 3975-3989. doi: 10.1021/acs.jafc.5b04710.
  68. Ow, Y.X., Uthicke, S., & Collier, C. (2016) Light levels affect carbon utilisation in tropical seagrass under ocean acidification. PLOS one. doi: 10.1371/journal.pone.0150352.
  69. Ow, Y.X., Vogel, N., Collier, C.J., Holtum, J.A.M., Flores, F., & Uthicke. S. (2016) Nitrate fertilisation does not enhance CO2 responses in two tropical seagrass species. Scientific Reports 6: 23093. doi: 10.1038/srep23093.
  70. Pernice, M., Sinutok, S., Sablok, G., Commault, A.S., Schliep, M., Macreadie, P.I., Rasheed, M.A., & Ralph, P.J. (2016) Molecular physiology reveals ammonium uptake and related gene expession in the seagrass Zostera muelleri. Marine Environmental Research 122, 126-134. doi: 10.1016/j.marenvres.2016.10.003.
  71. Petus, C., Devlin, M., Thompson, A., McKenzie, L., Teixeira Da Silva, E., Collier, C., Tracey, D. & Martin, M. (2016) Estimating the exposure of coral reefs and seagrass meadows to land-sourced contaminants in river flood plumes of the Great Barrier Reef: validating a simple satellite risk framework with environmental data. Remote Sensing 8(3), 210. doi: 10.3390/rs8030210.
  72. Pusey, B.J., Bentley, A., Burrows, D., Perna, C., Davis, A. and Hughes, J. (2016)  Contrasting and complex evolutionary histories within the terapontid genus Hephaestus revealed by nuclear and mitochondrial genes.  Marine and Freshwater Research 67(12), 1813-1825. doi.org/10.1071/MF15198
  73. Pusey, B.J., Fisher, C., & Maclaine, J. (2016) On the nature of Scleropages leichardti Gunther, 1864 (Pisces: Osteoglossidae). Zootaxa 4173(1), 075-084. doi: 10.11646./zootaxa.4173.1.7.
  74. Roberts, D.A. and de Nys, R. (2016) The effects of feedstock pre-treatment and pyrolysis temperature on the production of biochar from the green seaweed Ulva. Journal of Environmental Management 169: 253-260. doi:10.1016/j.jenvman.2015.12.023
  75. Robson, H.L.A., Noble, T.H., Saunders, R.J., Robson, S.K.A., Burrows, D.W., Jerry, D.R. (2016) Fine tuning for the tropics: application of eDNA technology for invasive fish detection in tropical freshwater ecosystems. Molecular Ecology Resources. doi: 10.1111/1755-0998.12505
  76. Rogers, K., Boon, P.I., Branigan, S., Duke, N.C., Field, C.D., Fitzsimons, J.A., Kirkman, H., Mackenzie, J.R., & Saintilan, N. (2016) The state of legislation and policy protecting Australia’s mangrove and salt marsh and their ecosystem services. Marine Policy 72, 139-155. doi: 10.1016/j.marpol.2016.06.025.
  77. Ryan, E.M., Lewis, S.E., Smithers, S.G., Clark, T.R., & Zhao, J.X. (2016) Multi-scale records of reef development and condition provide context for contemporary changes on inshore reefs. Global and Planetary Change 146, 162-178. doi: 10.1016/j.globlacha.2016.10.007.
  78. Ryan, E.J., Smithers, S.G., Lewis, S.E., Clark, T.R., & Zhao, J.X. (2016) Chronostratigraphy of Bramston Reef reveals a long-term record of fringing reef growth under muddy conditions in the central Great Barrier Reef. Palaeogeography, Palaeoclimatology, Paloeoecology 441, 734-747. doi: 10.1016/j.palaeo.2015.10.016.
  79. Ryan, E.J., Smithers, S.G., Lewis, S.E., Clark, T.R., & Zhao, J.X. (2016) The influence of sea levels and cyclones on Holocene reef flat development: Middle Island, central Great Barrier Reef. Coral Reefs 35, 805-818. doi: 10.1007/s00338-016.1453-9.
  80. Serrano, O., Lavery, P.S., Duarte, C.M., Kendrick, G.A., Calafat, A., York, P.H., Steven, A., & Macreadie, M.I. (2016) Can mud (silt and clay) concentration be used to predict soil organic carbon content within seagrass ecosystems? Biogeosciences 13, 4915-4926. doi: 10.5194/bg-13-4915-2016.
  81. Sheaves, M., Baker, R., Abrantes, K.G., & Connolly, R.M. (2016) Fish biomass in tropical estuaries: substantial variation in food web structure, sources of nutrition and ecosystem-supporting processes. Estuaries and Coasts 40(2), 580-593. doi: 10.1007/s12237-016-0159-0.
  82. Sheaves, M., Baker, R., McLeod, I.M, Abrantes, K.G., Wani, J., Barnett, A. (2016) The conservation status of Niugini black bass: a world-renowned sport fish with an uncertain future. Fisheries Management and Ecology 23(3-4), 243-252. doi: 10.1111/fme.12153.
  83. Sheaves, M., Coles, R., Dale, P., Grech, A., Pressey, R.L. & Waltham, N.J. (2016) Enhancing the value and validity of EIA: Serious science to protect Australia’s Great Barrier Reef. Conservation Letters 9(5), 377-383. doi: 10.1111/conl.12219.
  84. Sheaves, M., Johnston, R., & Baker, R. (2016) Use of mangroves by fish: new insights from in-forest videos. Marine Ecology – Progress Series 549, 167-182. doi: 10.3354/meps11690.
  85. Sherman, C.D.H., York, P.H., Smith, T.M., & Macreadie, P.I. (2016) Fine-scale patterns of genetic variation in a widespread clonal seagrass species. Marine Biology 163:82. doi: 10.1007/s00227-016-2861-7.
  86. Shimada, T., Limpus, C., Jones, R., Hazel, J., Groom, R., Hamann, M. (2016a) Sea turtles return home after intentional displacement from coastal foraging areas. Marine Biology, 163, 1-14. doi: 10.1007/s00227-015-2771-0.
  87. Shimada, T., Jones, R., Limpus, C., Hamann, M. (2016b) Time-restricted orientation of green turtles. Journal of Experimental Marine Biology and Ecology 484, 31-38. doi: 10.1016/j.jembe.2016.08.006
  88. Shimada, T., Jones, R., Limpus, C., Groom, R., Hamann, M. (2016c) Long-term and seasonal patterns of sea turtle home ranges in warm coastal foraging habitats: implications for conservation. Marine Ecology Progress Series 562, 163-179. doi: 10.3354/meps11972
  89. Smith, T.M., York, P.H., Macreadie, P.I., Keough, M.J., Ross, D.J., & Sherman, C.D.H. (2016) Recovery pathways from small scale disturbance in a temperate Australian seagrass. Marine Ecology Progress Series 542, 97-108. doi: 10.3354/meps11531.
  90. Smith, T.M., York, P.H., Macreadie, P.I., Keough, M.J., Ross, D.J., & Sherman, C.D.H. (2016) Spatial variation in reproductive effort of a southern Australian seagrass. Marine Enviornmental Research 120, 214-224. doi: 10.1016/j.marenvres.2016.08.010.
  91. Starrs, D., Ebner, B.C., & Fulton, C.J. (2016) All in the ears: unlocking the early life history biology and spatial ecology of fishes. Biological Reviews 91, 86-105. doi: 1111/brv.12162.
  92. Takahashi, M., Noonan, S.H.C., Fabricius, K.E., & Collier, C.J. (2016) The effects of long-term in situ CO2 enrichment on tropical seagrass communities at volcanic vents. ICES Journal of Marine Science 73, Issue 3, 876-886. doi: 10.1093/icesjms/fsv157.
  93. Teodosio, M.A., Paris, C.B., Wolanski, E., & Morais, P. (2016) Biophysical processes leading to the ingress of temperate fish larvae into estuarine nursery areas: A review. Estuarine, Coastal and Shelf Science 183, 187-202. doi: 10.1016/j.ecss.2016.10.022.
  94. Thomson, A.C.G., York, P.H., Smith, T.M., Sherman, C.D.H., Booth, D.J., Keough, M.J., Ross, D.J., & Macreadie, P.I. (2016) Response to “Comment on ‘Seagrass Viviparous Propagules as a Potential Long-Distance Dispersal Mechanism’ by A.C.G. Thomson et al”. Estuaries and Coasts 39, 875-876. doi: 10.1007/s12237-015-0040-6.
  95. Tol, S., Coles, R.G., & Congdon, B.C. (2016) Dugong dugon feeding in tropical Australian seagrass meadows: implications for conservation planning. PeerJ: e2194. doi: 10.7717/peerj.2194.
  96. Villacorta-Rath, C., Ilyushkina, I., Strugnell, J.M., Green B.S., Murphy, N.P., Doyle, S.R., Hall, N.E., Robinson, A,J., & Bell, J.J. (2016) Outlier SNPs enable food traceability of the southern rock lobster, Jasus edwardsii. Marine Biology 163:223. doi: 10.1007/s00227-016-3000-1.
  97. Waltham, N.J. (2016) Unravelling life history of the inland freshwater crab Austrothelphusa transversa in seasonal tropical river catchments. Australian Zoologist 38(2), 217-221. doi: 10.7882/AZ.2016.034.
  98. Wang, X.H., Wang, D. P., Sun, Z., He, Z., Liu, H., Guan, W., Chen, D., Ding, P., He, Q., Wang, H., Bao, X., Gan, J., Geyer, W.R. Li, L., Liu, J.T., Lowe, R., Winterwerp, J.C. Wolanski, E., Yin, K, You, Z.J., & Zhu, J. (2016) International scientists discuss impact on China’s estuarine and coastal environment by intensive anthropogenic activities. The 2nd workshop on sediment dynamics of muddy coasts and estuaries: Physics, biology and their interactions, Zhoushan, China, 23-26 October, 2015. Estaurine, Coastal and Shelf Science 168, ii-iii. doi: 10.1016/S0272-7714(15)00342-X.
  99. Waterhouse, J., Brodie, J., Lewis, S., & Audas, D.M. (2016) Land-sea connectivity, ecohydrology and holistic management of the Great Barrier Reef and its catchments: time for a change. Ecohydrology & Hydrobiology 16(1), 45-57. doi: 10.1016/j.ecohyd.2015.08.005.
  100. Wenger, A.S., Williamson, D.H., da Silva, E.T., Ceccarelli, D.M., Browne, N., Petus, C., & Devlin, M.J. (2016) Effects of reduced water quality on coral reefs in and out of no-take marine reserves. Conservation Biology 30(1), 142-153. doi: 10.1111.cobi.12576.
  101. Wooldridge, S.A., Heron, S.F., Brodie, J.E., Done, T.J., Masiri, I., & Hinrichs, S. (2016) Excess seawater nutrients, enlarged algal symbiont densities and bleaching sensitive reef locations: 2. A regional-scale predictive model for the Great Barrier Reef, Australia. Marine Pollution Bulletin 114, 343-354. doi: 10.1016.j.marpolbul.2016.09.045.
  102. Yan, Y-B., Duke, N.C., & Sun, M. (2016) Comparative analysis of the pattern of population genetic diversity in three indo-west pacific Rhizophora mangrove species. Frontiers in Plant Science 7, 1-17. doi: 10.3389/fpls.2016.01434.
  103. Yang, Y., Duke, N., Peng, F., Li, J., Yang, S., Zhong, C., Zhou, R., & Shi, S. (2016) Ancient geographical barriers drive differentiation among Sonneratia caseolaris populations and recent divergence from S. Ianceolata. Frontiers in Plant Science 7(1618), 1-14. doi: 10.3389/fpls.2016.01618.
  104. Zeh, D.R., Heupel, M.R., Hamann, M., Limpus, C.J., Marsh, H. (2016) Quick Fix GPS technology highlights risk to dugongs moving between protected areas. Endangered Species Research 30, 37-44. doi: 10.3354/esr00725


  1. Abrantes, K., Barnett, A., Baker, R., & Sheaves, M. (2015) Habitat-specific food webs and tropic interactions supporting coastal-dependent fisher species: An Australian case study. Review in Fish Biology and Fisheries, Volume 25(2)337-363. doi: 10.1007/s11160-015-9385-y.
  2. Álvarez-Romero, J.G., Pressey, R.L., Ban, N.C., & Brodie, J. (2015) Advancing Land-Sea Conservation Planning: Integrating Modelling of Catchments, Land-Use Change, and River Plumes to Prioritise Catchment Management and Protection. PLoS ONE 10(12): e0145574. doi: 10.1371/journal.pone.0145574.
  3. Amirabdollahian, M. & Datta, B. (2015) Reliability evaluation of groundwater contamination source characterization under uncertain flow field. International Journal of Environmental Science and Development 6(7), 512-518. doi: 10/7763/IJESD.2016.V6.647.
  4. Aswani, S., Diedrich, A., & Currier, K. (2015) Planning for the future: Mapping anticipated environmental and social impacts in a nascent tourism destination. Society and Natural Resources, 28(7): 703-719. doi: 10.1080/08941920.2015.1020582.
  5. Baker, R., Sheaves, M., & Johnson, R. (2015) Geographic variation in mangrove flooding and accessibility for fishes and nektonic crustaceans. Hydrobiologia, 762(1): 1-14. DOI 10.1007/s10750-015-2329-7.
  6. Barnett, A., Abrantes, K.G., Baker, R., Diedrich, A.S., Farr, M., Kuilboer, A., Mahony, T., McLeod, I.M., Moscardo, G., Prideaux, M., Stoeckl, N., van Luyn, A., & Sheaves, M. (2015) Sportfisheries, conservation and sustainable livelihoods: a multidisciplinary guide to developing best practice. Fish and Fisheries. DOI: 10.1111/faf.12140
  7. Bartley, R., Croke, J., Bainbridge, Z., Austin, J., & Kuhnert, P. (2015) Combining contemporary and long term erosion rates to target erosion hot-spots in the Great Barrier Reef catchments. Anthropocene, 10: 1-12. doi: 10.1016/j.ancene.2015.08.002.
  8. Boyero, L., R.G. Pearson, et al. (2015) Latitudinal gradient of nestedness and its potential drivers in stream detritivores. Ecography, 38: 949–955.
  9. Boyero, L, R.G. Pearson, et al. (2015) Leaf litter breakdown in tropical streams: is variability the norm? Freshwater Science 34: 759-769.
  10. Brooks, J., Aldridge, K., Bice, C., Deegan, B., Ferguson, G. Paton, D., Sheaves, M., Ye, Q., & Zampatti, B. (2015) Fish productivity in the Lower Lakes and Coorong, Australia. Transaction of the Royal Society of South Australia, 139(2): 189-215.
  11. Carter, A.B., Carton, A.G., McCormick, M.I., Tobin, A.J. & Williams, A.J. (2015). Maternal size, not age, influences egg quality of a wild, protogynous coral reef fish, Plectropomus leopardus. Marine Ecology Progress Series, 529: 249-263. doi:10.3354/meps11277.doi:10.1080/03721426.2015.1074338
  12. Cleguer, C., Grech, A., Garrigue, C., & Marsh, H. (2015) Spatial mismatch between marine protected areas and dugongs in New Caledonia. Biological Conservation 184, 154-162. doi: 10.1016.j.biocon.2015.01.007.
  13. Cole, A.J., Roberts, D.A., Garside, A.L., de Nys, R., & Paul, N.A. (2015) Seaweed compost for agricultural crop production. Journal of Applied Phycology, 28(1): 629-642. doi:10.1007/s10811-015-0544-2.
  14. Coles, R.G., Rasheed, M.A., McKenzie, L.J., Grech, A., York, P.H., Sheaves, M., McKenna, S., & Bryant, C. (2015) The Great Barrier Reef World Heritage Area seagrasses: Managing this iconic Australian ecosystem resource for the future. Estuarine, Coastal and Shelf Science 153, A1-A12.
  15. Collins, G.M., Clark, T.D. & Carton, A.G. (2015) Physiological plasticity v. inter-population variability: understanding drivers of hypoxia tolerance in a tropical estuarine fish. Marine and Freshwater Research. DOI: 10.1071/MF15046
  16. Connolly, N.M., Pearson, R.G., Loong D., Maughan, M., & Brodie, J. (2015) Water quality variation along streams with similar agricultural development but contrasting riparian vegetation. Agriculture, Ecosystems and Environment 213, 11-20. doi: 10.1016/j.agee.2015.07.007.
  17. Connolly, R.M., & Waltham, N.J. (2015) Spatial analysis of carbon isotopes reveals seagrass contribution to fishery food web. Ecosphere 6(9): 148. doi: 10.1890/ES14-00243.1.
  18. Creighton, C., Boon, P.I., Brookes, J.D., & Sheaves, M. (2015) Repairing Australia’s estuaries for improved fisheries production – what benefits, at what cost? Marine and Freshwater Research 66, 493-507. doi: 10.1071/MF14041.
  19. Critchell, K., Grech, A., Schlaefer, J., Andutta, F.P., Lambrechts, J., Wolanski, E., & Hamann, M. (2015) Modelling the fate of marine debris along a complex shoreline: Lessons from the Great Barrier Reef. Estuarine, Coastal and Shelf Science, 1-13. doi: 10.1016/j.ecss.2015.10.018.
  20. Dafforn, K.A., Mayer-Pinto, M., Morris, R.L., & Waltham, N.J. (2015) Application of management tools to integrate ecological principles with the design of marine infrastructure. Journal of Environmental Management 158, 61-73. doi: 10.1016/j.jenvman.2015.05.001.
  21. Dahl, S., Eagle, L., & Low, D.R. (2015) Integrated marketing communications in social marketing: Together for the common good? Journal of Social Marketing 5(3), 226-240. doi: 10.1108/JSOCM-07-2012-0031.
  22. Dao, H.T., Smith-Keune, C., Wolanski, E., Jones, C.M., & Jerry, D.R. (2015) Oceanographic currents and local ecological knowledge indicate, and genetics does not refute, a contemporary pattern of larval dispersal for the ornate spiny lobster, Panulirus ornatus in the South-East Asian Archipelago.  PLOS One. doi: 10.1371/journal.pone.0124568.
  23. Datta, B., & Kourakos, G. (2015) Preface: Optimization for groundwater characterization and management. Hydrogeology Journal 23(6), 1043-1049. doi: 10/1007/s10040-015-1297-3.
  24. Davis, A.M., & Moore, A.R. (2015) Conservation potential of artificial water bodies for fish communities on a heavily modified agricultural floodplain. Aquatic Conservation: Marine and Freshwater Ecosystems. doi: 10.1002/aqc.2607.
  25. Davis A.M., Pearson, R.G.  Kneipp, I.J., Benson, L.J., & L. Fernandes (2015) Spatiotemporal variability and environmental determinants of invertebrate assemblage structure in an Australian tropical river. Freshwater Science, 34: 634-647.
  26. Delandmeter, P., Lewis, S.E., Lambrechts, J., Deleersnijder, E., Legat, V., & Wolanski, E. (2015) The transport and fate of riverine fine sediment exported to a semi-open system. Estuarine, Coastal and Shelf Science 167, 336-346. doi: 10.1016/j.ecss.2015.10.011.
  27. Dell, A.I., Zhao, L., Brose, U., Pearson, R.G. & R.A  Alford (2015) Population and community body size structure across a complex environmental landscape. Advances in Ecological Research, 52: 115-167.
  28. Devillers, R., Pressey, R.L., Grech, A., Kittinger, J.N., Edgar, G.J., Ward, T., & Watson, R. (2015) Reinventing residual reserves in the sea: are we favouring ease of establishment over need for protection. Aquatic Conservation: Marine and Freshwater Ecosystems 25(4), 480-504. doi: 10.1002/aqc.2445.
  29. Devlin, M.J., Le Quesne, W.J.F., & Lyons, B.P. (2015) The marine environment of Kuwait – Emerging issues in a rapidly changing environment. Marine Pollution Bulletin 100(2), 593-596. doi: 10.1016/j.marpolbul.2015.11.046.
  30. Devlin, M.J., Massoud, M.S., Hamid, S.A., Al-Zaidan, A., Al-Sarawi, H., Al-Enezi, M., Al-Ghofran, L., Smith, A.J., Barry, J., Stentiford, G.D., Morris, S., da Silva, E.T., & Lyons, B.P. (2015) Changes in the water quality conditions of Kuwait’s marine waters: Long term impacts on nutrient enrichment. Marine Pollution Bulletin 100(2), 607-620. doi: 10.1016/j.marpolbul.2015.10.022.
  31. Devlin, M.J., Petus, C., da Silva, E., Tracey, D., Wolff, N.H., Waterhouse, J., & Brodie, J. (2015) Water quality and river plume monitoring in the Great Barrier Reef: An overview of methods based on ocean colour satellite data. Remote Sensing, 7: 12909-12941. doi: 10.3390/rs71012909.
  32. Dudgeon, C.L., Pollock, K.H., Braccini, J.M., Semmens, J.M., & Barnett, A. (2015) Integrating acoustic telemetry into mark-recapture models to improve the precision of apparent survival and abundance estimates. Oecologia. doi: 10.1007/s00442-015-3280-z.
  33. Eagle, L., Case, P., Low, D., & Vandommele, L. (2015) Attitudes of undergraduate business students towards sustainability issues. International Journal of Sustainability in Higher Education 16(5), 650-668. doi: 10.1108/IJSHE-04-2014-0054.
  34. Eagle, L.C., & Dahl, S. (2015) Product placement in old and new media: examining the evidence for concern. Journal of Business Ethics, 1-14. doi: 10.1007/s10551-015-295.
  35. Eagle, L., Low, D., & Vandommele, L. (2015) Social marketing perspectives on barriers to and enablers of effective sustainability communication. Sinergie Italian Journal of Management 33(96), 131-150. doi: 10.7433/S96.2015.08.
  36. Ebner, B.C., Fulton, C.J., Cousins, S., Donaldson, J.A., Kennard, M.J., Meynecke, J., & Schaffer, J. (2015) Filming and snorkelling as visual techniques to survey fauna in difficult to access tropical rainforest streams. Marine and Freshwater Research, 66: 120-126. doi: 10.1071/MF13339.
  37. Edmunds, R.C., Gill, J.A., Baldwin, D.H., Linbo, T.L., French, B.L., Brown, T.L., Esbaugh, A.J., Mager, E.M., Stieglitz, J., Hoenig, R., Benetti, D., Grosell, M., Scholz, N., & Incardona, J.P. (2015) Corresponding morphological and molecular indicators of crude oil toxicity to the developing hearts of mahi mahi. Scientific Reports 5:17326. doi: 10.1038/srep17326.
  38. Edmunds, R.C., Su, B., Balhoff, J.P., Eames, B.F., Dahdul, W.M., Lapp, H., Lundberg, J.G., Vision, T.J., Dunham, R.A., Mabee, P.M., & Westerfield, M. (2015) Phenoscape: Identifying candidate genes for evolutionary phenotypes. Molecular Biology and Evolution 33(1), 13-24. doi: 10.1093/molbev/msv223.
  39. Elliott, M., & Wolanski, E. (2015) Editorial – Climate change impacts on rural poverty in low-elevation coastal zones, Edward B. Barbier. Estuarine, Coastal and Shelf Science 165, ii-iii. doi: 10.1016.S0272-7714(15)00287-5.
  40. Espinoza-Rodrigues, N., Carrasquero, J., De Turris-Morales, K., Delgado-Ortega, G., & Barrios-Garrido, H. (2015) Seabirds and Sotalia guianensis associations at the southern Gulf of Venezuela. Ecologia 37(2), 309-318. doi: 10.15446/caldasia.v37n2.54381.
  41. Fuentes, M.M.P.B., Bell, I., Hagihara, R., Hamann, M., Hazel, J., Huth, A., Seminoff, J.A., Sobtzick, S., & Marsh, H. (2015) Improving in-water estimates of marine turtle abundance by adjusting aerial survey counts for perception and availability biases. Journal of Experimental Marine Biology and Ecology, 471: 77-83. doi: 10.1016.j.jembe.2015.05.003.
  42. Gillies, G.L., Fitzsimons, J.A., Branigan, S., Hale, L., Hancock, B., Creighton, C., Alleway, H., Bishop, M.J., Brown, S., Chamberlain, D., Cleveland, B., Crawford, C., Crawford, M., Diggles, B., Ford, J.R., Hamer, P., Hart, A., Johnston, E., McDonald, T., McLeod, I., Pinner, B., Russell, D., & Winstanley, R. (2015) Scaling-up marine restoration efforts in Australia. Ecological Management & Restoration, 16: 84-85. doi: 10.1111/emr.12159.
  43. Hall, N.M., Berry, K.L.E., Rintoul, L., & Hoogenboom. M.O. (2015) Microplastic ingestion by scleractinian corals. Marine Biology 162, 725-732. doi: 10.1007/s00227-015-2619-7.
  44. Hu, X., Gao, W., Liu, T. & Lin, W. (2015) Fluid flow situation in the nozzle of the theoretical analysis and numerical simulation. Journal of Yunnan Normal University, 35 (1): 11-16.
  45. Huerlimann, R., Zenger, K.R., Jerry, D.R., & Heimann, K. (2015) Phylogenetic analysis of nucleus-encoded acetyl-CoA carboxylases targeted at the cytosol and plastid of algae. PLoS ONE 10(7), 1-10. doi: 10.1371/journal.pone.0131099.
  46. Hughes, T.P., Day, J.C, & Brodie, J. (2015) Securing the future of the Great Barrier Reef. Nature Climate Change 5, 508-511. doi: 10.1038/nclimate2604.
  47. Inam, M.I., Lin, W., Armfield, S.W. & He, Y. (2015) Asymmetry and penetration of transitional plane fountains in stratified fluid. International Journal of Heat and Mass Transfer, 90: 1125-1142.
  48. James, C.S., Capon, S.J., & Quinn, G.P. (2015) Nurse plant effects of a dominant shrub (Duma florulenta) on understorey vegetation in a large, semi-arid wetland in relation to flood frequency and drying. Journal of Vegetation Science, 26: 985-994. doi: 10.1111/jvs.12297.
  49. Jarvis, J.C., & Moore, D.A. (2015) Effects of seed source, sediment type, and burial depth on mixed-annual and perennial Zostera marina L. seed germinatation and seedling establishment. Estuaries and Coasts 38(3), 964-978. doi: 10.1007/s12237-014-9869-3.
  50. Jha, M., & Datta, B. (2015) Application of dedicated monitoring: network design for unknown pollutant-sources identification based on dynamic time warping. Journal of Water Resources Planning and Management, 141 (11), 1-13. doi: 10.1061/(ASCE)WR.1943-5452.0000513
  51. Jha, M., & Datta, B. (2015) Application of unknown groundwater pollution source release history estimation methodology to distributed sources incorporating surface-groundwater interactions. Environmental Forensics 16(2), 143-162. doi: 10/1080/15275922.2015
  52. Karim, F., Petheram, C., Marvanek, S., Ticehurst, C., Wallace, J., & Hasan, M. (2015) Impact of climate change on floodplain inundation and hydrological connectivity between wetlands and rivers in a tropical river catchment. Hydrological Processes. doi: 10.1002/hyp.10714.
  53. Keir, A.F., Pearson, R.G. & R.A. Congdon (2015) Determinants of bird assemblage composition in riparian vegetation on sugarcane farms in the Queensland Wet Tropics. Pacific Conservation Biology, 21: 1-14.
  54. Kilminster, K., McMahon, K., Waycott, M., Kendrick, G.A., Scanes, P., McKenzie, L., O’Brien, K.R., Lyons, M., Ferguson, A., Maxwell, P., Glasby, T., & Udy, J. (2015) Unravelling complexity in seagrass systems for management: Australia as a microcosm. Science of the Total Environment, 534: 97-109. doi: 10.1016/j.scitotenv.2015.04.061.
  55. Kiwango, H., Njau, K.N., & Wolanski, E. (2015) The need to enforce minimum environmental flow requirements in Tanzania to preserve estuaries: case study of mangrove-fringed Wami River estuary. Ecohydrology & Hydrobiology 15, Issue 4, 171-181. doi: 10.1016/j.ecohyd.2015.09.002.
  56. Koohpayehzadeh Esfahani, H., & Bithin, D. (2015) Simulation of reactive geochemical transport processes in contaminated aquifers using surrogate models. International Journal of Geomate 8(15), 1190-1196.
  57. Kroon, F., Phillips, S., Burrows, D., and Hogan, A. (2015) Presence and absence of non-native fish species in the Wet Tropics region, Australia. Journal of Fish Biology, 86: 1177-1185. doi: 10.1111/jfb.12614.
  58. Lane, D.J., van Eyk, P.J., de Nys, R., Roberts, D.A., Cole, A.J. and Ashman, P.J. (2015) Mobilisation of trace elements during thermal conversion of algae cultivated in ash dam water. Biomass and Bioenergy, 83: 183-195. doi:10.1016/j.biombioe.2015.09.013
  59. Lawes, M.J., Fisher, D.O., Johnson, C.N., Blomberg, S.P., Frank, A.S.K., Fritz, S.A., McCallum, H., Van Der Wal, J., Abbott, B.N., Legge, S., Letnic, M., Thomas, C.R., Thurgate, N., Fisher, A., Gordon, I.J., & Kutt, A. (2015) Correlates of recent declines of rodents in Northern and Southern Australia: Habitat structure is critical. PLOS One, 1-17. doi: 10.1371/journal.pone.0130626.
  60. Lawton, R.J., Carl, C., de Nys, R., & Paul, N.A. (2015) Heritable variation in growth and biomass productivity in the clonal freshwater macroalga Oedogonium. Algal Research, 8: 108-114. doi: 10.1016/j.algal.2015.01.012.
  61. Lewis, S.E., Wust, R.A.J., Webster, J.M., Collins, J., Wright, S.A., & Jacobsen, G. (2015) Rapid relative sea-level fall along north-eastern Australia between 1200 and 800 cal. yr BP: An appraisal of the oyster evidence. Marine Geology, 370: 20-30. doi: 10.1016/j.margeo.2015.09.014.
  62. Li, Y., Su, N., Liang, L., Ma, L., Yan, Y., & Sun, Y. (2015) Multiscale monsoon variability during the last two climatic cycles revealed by spectral signals in Chinese loess and speleothem records. Climate of the Past 11, 1067-1075. doi: 10.5194/cp-11-1067-205.
  63. Li, Y., Wolanski, E., & Zhang, H. (2015) What processes control the net currents through shallow straits? A review with application to the Bohai Strait, China. Estuarine, Coastal and Shelf Science 158, 1-11. doi: 10.1016/j.ecss.2015.03.013.
  64. Lough, J.M., Lewis, S.E., & Cantin, N.E. (2015) Freshwater impacts in the central Great Barrier Reef: 1648-2011. Coral Reefs, 34: 739-751. doi: 10.1007/s00338-015-1297-8.
  65. Lyons, B.P., Barber, J.L., Rumney, H.S., Bolam, T.P.C., Bersuder, P., Law, R.J., Mason, C., Smith, A.J., Morris, S., Devlin, M.J., Al-Enezi, M., Massoud, M.S., Al-Zaidan, A.S., & Al-Sarawi, H.A. (2015) Baseline survey of marine sediments collected from the State of Kuwait: PAHs, PCBs, brominated flame retardants and metal contamination. Marine Pollution Bulletin 100, 629-636. doi: 10.1016/j.marpolbul.2015.08.014.
  66. Lyons, B.P., Devlin, M.J., Abdul Hamid, S.A., Al-Otiabi, A.F., Al-Enezi, M., Massoud, M.S., Al-Zaidan, A.S., Smith, A.J., Morris, S., Bersuder, P., Barber, J.L., Papachlimitzou, A., & Al-Sarawi, H.A. (2015) Microbial water quality and sedimentary faecal sterols as markers of sewage contamination in Kuwait. Marine Pollution Bulletin 100, Issue 2, 689-698. doi: 10.1016/j.marpolbul.2015.07.043.
  67. Mahmud, H., Lin, W., Gao, W., Armfield, S.W. & He, Y. (2015) Behavior of the interaction between twin transitional round fountains in a homogeneous fluid, Part 2: numerical study. International Journal of Heat and Mass Transfer, 86: 973-991.
  68. Mahmud, H., Lin, W., Gao, W., Hill, B., Armfield, S.W. & He, Y. (2015) Behavior of the interaction between twin transitional round fountains in a homogeneous fluid, Part 1: experimental study. International Journal of Heat and Mass Transfer, 86: 957-972.
  69. Marsh, H., Grayson, J., Grech, A., Hagihara, R., & Sobtzick, S. (2015) Re-evaluation of the sustainability of a marine mammal harvest by indigenous people using several lines of evidence. Biological Conservation, 192: 324-330. doi: 10.1016.j.biocon.2015.10.007.
  70. Martin, T.G., Murphy, H., Liedloff, A., Thomas, C., Chades, I., Cook, G., Fensham, R., McIvor, J., & van Klinken, R.D. (2015) Buffel grass and climate change: a framework for projecting invasive species distributions when data are scarce. Biol Invasions 17(11), 3197-3210. doi: 10.1007/s10530-015-0945-9.
  71. Masese, F.O., Abrantes, K.G. Gettel, G.M., Bouillon, S., Irvine, K., & McClain, M.E. (2015) Are large herbivores vectors of terrestrial subsidies for riverine food webs? Ecosystems 18(4), 686-706. doi: 10.1007/s10021-015-9859-8.
  72. Mata, L., Magnusson, M., Paul, N.A. & de Nys, R. (2015) The intensive land-based production of the green seaweeds Derbesia tenuissima and Ulva ohnoi: biomass and bioproducts. Journal of Applied Phycology, 28(1): 365-375. doi: 10.1007/s10811-015-0561-1.
  73. McKenna, S., Jarvis, J., Sankey, T., Reason, C., Coles, R., & Rasheed, M. (2015) Declines of seagrasses in a tropical harbour, North Queensland, Australia, are not the result of a single event. Journal of Biosciences 40(2), 389-309. doi: 10.1007/s12038-015-9516-6.
  74. McLeod, I.M., Jones, R.E., Jones, G.P., Takahashi, M., & McCormick, M.I. (2015) Interannual variation in the larval development of a coral reef fish in response to temperature and associated environmental factors. Marine Biology 162, Issue 12, 2379-2389. doi: 10.1007/s00277-015-2765-y.
  75. McAllister, J.D., Barnett, A., Lyle, J.M., & Semmens, J.M. (2015) Examining the functional role of current area closures used for the conservation of an overexploited and highly mobile fishery species. ICES Journal of Marine Science 72(8), 2234-2244. doi: 10.1093/icesjms/fsv079.
  76. McLeod, I.M., McCormick, M.I., Munday, P.L., Clark, T.D., Wenger, A.S., Brooker, R.M., Takahashi, M., & Jones, G.P. (2015) Latitudinal variation in larval development of coral reef fishes: implications of a warming ocean. Marine Ecology Progress Series, 521: 129-141. doi: 10.3354.meps11136.
  77. Melland, A.R., Silburn, D.M., McHugh, A.D., Fillols, E., Rojas-Ponce, S., Baillie, C., & Lewis, S. (2015) Spot spraying reduces herbicide concentrations in runoff. Journal of Agricultural and Food Chemistry. doi: 10.1021/acs.jafc.5b03688.
  78. Moosdorf, N., Stieglitz, T., Waska, H., Durr, H.H. & Hartmann, J. (2015) Submarine groundwater discharge from tropical islands: a review. Grundwasser 20(1), 53-67. doi: 10.1007/s00767-014-0275-3.
  79. Morgan, D.L., Allen, M.G., Ebner, B.C., Whitty, J.M., & Beatty, S.J. (2015) Discovery of a pupping site and nursery for critically endangered green sawfish Pristis zijsron. Journal of Fish Biology 86, 1658-1663. doi: 10.1111/jfb.12668.
  80. Nagelkerken, I., Sheaves, M., Baker, R., & Connolly, R.M. (2015) The seascape nursery: a novel spatial approach to identify and manage nurseries for coastal marine fauna. Fish and Fisheries16: 362-371. DOI: 10.1111/faf.12057.
  81. Negri, A.P., Flores, F., Mercurio, P., Mueller, J.F., & Collier, C.J. (2015) Lethal and sub-lethal chronic effects of the herbicide diuron on seagrass. Aquatic Toxicology 165, 73-83. doi: 10.1016.j.aquatox.2015.05.007.
  82. Nelson, P.N., Banabas, M., Goodrick, R., Webb, M.J., Huth, N.E., & O’Grady, D. (2015) Soil sampling in oil palm plantations: a practical design that accounts for lateral variability at the tree scale. Plant and Soil 394(1-2), 421-429. doi: 10.1007/s11104-015-2490-9.
  83. Nott, J., Forsyth, A., Rhodes, E., & O’Grady, D. (2015) The origin of centennial- to millennial-scale chronological gaps in storm emplaced beach ridge plains. Marine Geology 367, 83-93. doi: 10.1016/m.margeo.2015.05.011.
  84. Ow, Y.X., Collier, C.J., &  Uthicke, S. (2015) Responses of three tropical seagrass species to CO2 enrichment. Marine Biology. doi: 10.1007/s00227-01502644.6.
  85. Payne, N.L., Snelling, E.P., Fitzpatrick, R., Seymour, J., Courtney, R., Barnett, A., Watanabe, Y.Y., Sims, D.W., Squire, L.Jr., & Semmens, J.M. (2015) A new method of resolving uncertainty of energy requirements in large water-breathers: the ‘mega-flume’ seagoing swim-tunnel respirometer. Methods in Ecology and Evolution, 6: 668-677. doi: 10.1111/2041.210X.12358.
  86. Pearce, M., Eagle, L., Low, D., & Schurmann, A. (2015) Cut from ‘country’: The impact of climage change on the mental health of aboriginal pastoralists. Australasian Journal of Regional Studies 21(1), 50-79.
  87. Pearson, R.G., Connolly, N.M., & Boyero, L. (2015) Ecology of streams in a biogeographic isolate – the Queensland Wet Tropics, Australia. Freshwater Science, 34: 797-819. doi: 10.1086/681525.
  88. Prakash, O., & Datta, B. (2015) Optimal characterization of pollutant sources in contaiminaed aquifers by integrating sequential-monitoring-network design and source identification: methodology and an application in Australia. Hydrogeology Journal 23(6), 1089-1107. doi: 10.1007/s10040-015-1292-8.
  89. Ramesh, R., Chen, Z., Cummins, V., Day, J., D’Elia, C., Dennison, B., Forbes, D.L., Glaeser, B., Glaser, M., Glavovic, B., Kremer, H., Lange, M., Larsen, J.N., Le Tissier, M., Newton, A., Pelling, M., Purvaja, R., & Wolanski, E. (2015) Land-ocean interactions in the coastal zone: Past, present & future. Anthropocene 12, 85-98. doi: 10.1016/j.ancene.2016.01.005.
  90. Razaghi, A., Huerlimann, R., Owens, L., & Heimann, K. (2015) Increased expression and secretion of recombinant hINFy through amino acid starvation-induced selective pressure on the adjacent HIS4 gene in Pichia pastoris. Acta Facultatis Pharmaceuticae Universitatis Comenianae 62(2), 1-8. doi: 10.1515/afpuc-2015-0031.
  91. Ricart, A.M., York. P.H., Rasheed, M.A., Perez, M., Romero, J., Bryant, C.V., & Macreadie, P.I. (2015) Variability of sedimentary organic carbon in patchy seagrass landscapes. Marine Pollution Bulletin 100(1), 476-482. doi: 10.1016/j.marpolbul.2015.09.032.
  92. Roberts, D.A., Paul, N.A., Bird, M.I., & de Nys, R. (2015) Bioremediation for coal-fired power stations using macroalgae. Journal of Environmental Management, 153: 25-32. doi: 10.1016/j.jenvman.2015.01.036.
  93. Roberts, D.A., Paul, N.A., Cole, A. J., & de Nys, R.(2015) From waste water treatment to land management: conversion of aquatic biomass to biochar for soil amelioration and the fortification of crops with essential trace elements. Journal of Environmental Management, 157: 60-68. doi:10.1016/j.jenvman.2015.04.016.
  94. Rojas-Canizales, D., Rodriguez, M.A., Suarez-Villasmil, L., & Barrios-Garrido, H. (2015) Preliminary assessment of the growth rate of the Colombian Slider, Trachemys callirostris callirostris (Testudines: Emydidae) in captivity. Memoria, 72(177-178), 91-99.
  95. Schaffer, J.R., Hamann, M., Rowe, R., & Burrows, D.W. (2015) Muddy waters: the influence of high suspended-sediment concentration on the diving behaviour of a bimodally respiring freshwater turtle from north-eastern Australia. Marine and Freshwater Research 67, 505-512. doi: 10.1071/MF14117.
  96. Schliep, M., Pernice, M., Sinutok, S., Bryant, C.V., York, P.H., Rasheed, M.A., & Ralph, P.J. (2015) Evaluation of reference genes for RT-qPCR studies in the seagrass Zostera muelleri exposed to light limitation. Scientific Reports, 5:17051. doi: 10.1038/srep.17051.
  97. Sheaves, M., Baker, R., Nagelkerken, I., & Connolly, R.M. (2015) True value of estuarine and coastal nurseries for fish: incorporating complexity and dynamics. Estuaries and Coasts, 38: 401-414. DOI 10.1007/s12237-014-9846-x.
  98. Smith, A.J., McGowan, T., Devlin, M.J., Massoud, M.S., Al-Enezi, M., Al-Zaidan, A.S., Al-Sarawi, H.A., & Lyons, B.P. (2015) Screening for contaminant hotspots in the marine environment of Kuwait using ecotoxicological and chemical screening techniques. Marine Pollution Bulletin 100(2), 681-688. doi: 10.1016/j.marpolbul.2015.09.043.
  99. Sreekanth, J., & Datta, B. (2015) Review: simulation-optimization models for the management and monitoring of coastal aquifers. Hydrogeology Journal 23, 1155-1166. doi: 10/1007/s10040-015-1272-z.
  100. Starrs, D., Ebner, B.C., & Fulton, C.J. (2015) Ceasefire: minimal aggression among Murray River crayfish feeding upon patches of allochthonous material. Australian Journal of Zoology 63, 115-121. doi: 10.1071/ZO14081.
  101. Stehfest, K.M., Patterson, T.A., Barnett, A., & Semmens, J.M. (2015) Markov models and network analysis reveal sex-specific differences in the space-use of a coastal apex predator. Oikos 124: 307-318. doi: 10.1111/oik.01429.
  102. Su, N., Nelson, P.N., & Connor, S. (2015) The distributed-order fractional diffusion-wave equation of groundwater flow: Theory and application to pumping and slug tests. Journal of Hydrology, 529: 1262-1273. doi: 10.1016/j.jhydrol.2015.09.033.
  103. Templeman, M.A., & Kingsford, M.J. (2015) Predicting aqueous copper and zinc accumulation in the upside-down jellyfish Cassiopea maremetens through the use of biokinetic models. Environ Monit Assess, 187:416. doi: 10.1007/s10661-015-4657-5.
  104. Thomson, A.C.G., York, P.H., Smith, T.M., Sherman, C.D.H., Booth, D.J., Keough, M.J., Ross, D.J., & Macreadie, P.I. (2015) Seagrass viviparous propagules as a potential long-distance dispersal mechanism. Estuaries and Coasts, 38: 927-940. doi: 10.1007/s12237-014-9850-1.
  105. Unsworth, R.K.F., Collier, C.J., Waycott, M., McKenzie, L.J., & Cullen-Unsworth, L.C. (2015) A framework for the resilience of seagrass ecosystems. Marine Pollution Bulletin, 100 (1): 34-46. doi:10.1016/j.marpolbul.2015.08.016
  106. Vermeiren, P., Abrantes, K., & Sheaves, M. (2015) Generalist and specialist feeding crabs maintain discrete tropic niches within and among estuarine locations. Estuaries and Coasts 38(6), 2070-2082. doi: 10.1007/s12237-015-9959-x.
  107. Veron, J., Stafford-Smith, M., DeVantier, L., & Turak, E. (2015) Overview of distribution patterns of zooxanthellate Scleractinia. Frontiers in Marine Science, 1: Article 81. doi:10.3389/fmars.2014.00081
  108. Wallace, J., Waltham, N., Burrows, D., & McJannet, D. (2015) The temperature regimes of dry season waterholes in tropical northern Australia: potential impacts on fish refugia. Freshwater Science, 34(2): 663-678. doi: 10.1086/681278.
  109. Waltham, N.J., & Sheaves, M. (2015) Expanding urban and industrial development in tropical seascapes necessitates green engineering and spatial planning thinking. Environmental Science & Technology 49, 2598-2599. doi: 10.1021/acs.est5b00661
  110. Waltham, N.J., & Sheaves, M. (2015) Expanding coastal urban and industrial seascape in the Great Barrier Reef World Heritage Area: Critical need for coordinated planning and policy. Marine Policy 57, 78-84. doi: 10.1016/j.marpol.2015.03.030.
  111. Walsh, M. & Lin, W. (2015) A parametric study on the thermal performance of unglazed solar water collectors with their colorbond steel absorber plates also used as roofs. International Journal of Green Energy, 12 (12): 1309-1322.
  112. Weeks, S.J., Mango-Canto, M.M., Jaine, F.R.A., Brodie, J., & Richardson, A.J. (2015) Unique sequence of events triggers manta ray feeding frenzy in the Southern Great Barrier Reef, Australia. Remote Sensing, 7(3), 3138-3152. doi: 10.3390/rs70303138
  113. Wilkinson, A.D., Collier, C.J., Flores, F., Mercurio, P., O’Brien, J., Ralph, P.J., & Negri, A.P. (2015) A miniature bioassay for testing the acute phytotoxicity of photosystem II herbicides on Seagrass. PLOS One, 10(2): doi: 10.1371/journal.pone.0117541.
  114. Wilkinson, A.D., Collier, C.J., Flores, F., & Negri, A.P. (2015) Acute and additive toxicity of ten photosystem-II herbicides to seagrass. Scientific Reports, 5:17443. doi: 10.1038/srep17443.
  115. Williams, J.L., Pierce, S.J., Fuentes, M.M.P.B., & Hamann, M. (2015) Effectiveness of recreational divers for monitoring sea turtle populations. Endangered Species Research, 26: 209-219. doi: 10.3354/esr00647.
  116. Wooldridge, S.A., Brodie, J.E., Kroon, F.J., & Turner, R.D.R. (2015) Ecologically based targets for bioavailable (reactive) nitrogen discharge from the drainage basins of the Wet Tropics region, Great Barrier Reef. Marine Pollution Bulletin, 97(1-2), 262-272. doi: 10.1016/j.marpolbol.2015.06.007.
  117. Xu, H., Newton, A., Wolanski, E., & Chen, Z. (2015) The fate of phosphorus in the Yangtze (Changjiang) Estuary, China, under multi-stressors: Hindsight and forecast. Estuarine, Coastal and Shelf Science 163, Part B. doi: 10.1016/j.ecss.2015.05.032.
  118. York, P.H., Carter, A.B., Chartrand, K., Sankey, T., Wells, L., & Rasheed, M.A. (2015) Dynamics of a deep-water seagrass population on the Great Barrier Reef: annual occurrence and response to a major dredging program. Scientific Reports, 1-9. doi: 10.1038/srep13167.


  1. Abrantes, K.G., Barnett, A. & Bouillon, S. (2014) Stable isotope-based community metrics as a tool to identify patterns in food web structure in east African estuariesFunctional Ecology, 28: 270-282. doi: 10.1111/1365-2435.12155.
  2. Amirabdollahian, M., &  Datta, B. (2014) Identification of pollutant source characteristics under uncertainty in contaminated water resources systems using adaptive simulated anealing and fuzzy logic. International Journal of Geomate 6(1), 757-762.
  3. Andutta, F.P. Ridd, P.V., Deleersnijder, E., & Prandle, D. (2014) Contaminant exchange rates in estuaries – New formulae accounting for advection and dispersion. Progress in Oceanography, 120: 139-153. doi: 10.1016/j.pocean.2013.08.009.
  4. Alvarez-Romero, J.G., Wilkinson, S.N., Pressey, R.L., Ban, N.C., Kool, J., & Brodie, J. (2014) Modeling catchment nutrients and sediment loads to inform regional management of water quality in coastal-marine ecosystems: A comparison of two approachesJournal of Environmental Management, 146: 164-178. doi: 10.1016/j.jenvman.2014.07.007.
  5. Arthington, A.H., Godfrey, P.C., Pearson, R.G. Karim, F., & Wallace, J. (2014) Biodiversity values of remnant freshwater floodplain lagoons in agricultural catchments: evidence for fish of the Wet Tropics bioregion, northern AustraliaAquatic Conservation: Marine and Freshwater Ecosystems. doi: 10/1002/aqc.2489.
  6. Arthington, A.H., Rolls, R.J., Sternberg, D., Mackay, S.J., & James, C.S. (2014) Fish assemblages in subtropical rivers: low-flow hydrology dominates hydro-ecological relationshipsHydrological Sciences Journal, 59: 3-4. doi: 10/1080/02626667.2013.844345.
  7. Awruch, C.A., Jones, S.M., Asorey, G.M. & Barnett, A. (2014) Non-lethal assessment of the reproductive status of broadnose sevengill sharks (Notorynchus cepedianus) to determine the significance of habitat use in coastal areasConservation Physiology 2,10.1093/onphys/cou013.
  8. Bainbridge, Z.T., Lewis, S.E., Smithers, S.G., Kuhnert, P.M. Henderson, B.L., & Brodie, J.E. (2014) Fine-suspended sediment and water budgets for a large, seasonally dry tropical catchment: Burdekin River catchment, Queensland, Australia.Water Resources Research. doi: 10/1002/2013WR014386.
  9. Baker, R., Fujiwara, M., & Minello, T.J. (2014) Juvenile growth and mortality effects on white shrimp Litopenaeus setiferus population dynamics in the northern Gulf of MexicoFisheries Research155: 74-82. DOI 10.1016/j.fishres.2014.02.026.
  10. Baker, R., Buckland, A., & Sheaves, M. (2014) Fish gut content analysis: robust measures of diet compositionFish and Fisheries15: 170-177. DOI: 10.1111/faf.12026.
  11. Bartley, R., Bainbridge, Z.T.Lewis, S.E., Kroon, F.J., Wilkinson, S.N., Brodie, J.E., & Silburn, D.M. (2014) Relating sediment impacts on coral reefs to watershed sources, processes and management: A reviewScience of the Total Environment 468-469, 1138-1153. doi: 10.1016/j.scitotenv.2013.09.030.
  12. Bass, A.M.Munksgaard, N.C.LeBlanc, M.Tweed, S., & Bird, M.I. (2014). Contrasting carbon export dynamics of human impacted and pristine tropical catchments in response to a short-lived discharge event. Hydrological Processes 28,1835-1843.
  13. Binning, S.A., Barnes, J.I., Davies, J.N., Backwell, P.R.Y. Scott Keogh, J., & Roche, D.G. (2014) Ectoparasites modify escape behaviour, but not performance, in a coral reef fish. Animal Behaviour 93, 1-7. doi: 10.1016/j.anbehav.2014.04.010.
  14. Blancette, M.L., Davis, A.M., Jardine, T.D, & Pearson, R.G. (2014). Omnivory and opportunism characterize food webs in a large dry-tropics river system. Freshwater Science 33(1), 142-158. doi: 10/1086/674632.
  15. Boyero, L., Cardinale, B.J., Bastian, M., Pearson, R.G. (2014) Biotic vs. Abiotic control of decomposition: A comparison of the effects of simulated extinctions and changes in temperature. PLoS ONE 9(1): e87426. doi: 10.1371/journal.pone.0087426.
  16. Brodie, J. (2014) Dredging the Great Barrier Reef: Use and misuse of scienceEstuarine, Coastal and Shelf Science 142, 1-3. doi: 10.1016/j.ecss.2014.01.010.
  17. Brunnschweiler, J.M., Abrantes, K.G., & Barnett, A. (2014) Long-Term Changes in Species Composition and Relative Abundances of Sharks at a Provisioning Site. PLoS ONE 9(1): e86682. doi:10.1371/journal.pone.0086682
  18. Burns, K.A. (2014). PAHs in the Great Barrier Reef Lagoon reach potentially toxic levels from coal port activitiesEstuarine, Coastal and Shelf Science 144, 39-45. doi: 10.1016/j.ecss.2014.04.001
  19. Carter, A.B., Davies, C.R., Mapstone, B.D., Russ. G.R., Tobin, A.J., & Williams, A.J. (2014) Effects of region, demography, and protection from fishing on batch fecundity of common coral trout (Plectropomus leopardus). Coral Reefs 33, 751-763. doi: 10.1007/s00338-014-1164/z.
  20. Carter, A.B., Russ, G.R., Tobin, A.J., Williams, A.J., Davies, C.R., & Mapstone, B.D. (2014) Spatial variation in the effects of size and age on reproductive dynamics of common coral trout Plectropomus leopardus. Journal of Fish Biology 84, 1074-1098. doi: 10.1111/jfb.12346.
  21. Chen, H., Gao, W., Liu, T., Lin, W. & Liu, X. (2014) Numerical simulation study on thermal performance of four cross-V-groove solar air collectors. Journal of Yunnan Normal University, 34(4): 12-19.
  22. Cole, A.J., de Nys, R., & Paul, N.A. (2014). Biorecovery of nutrient waste as protein in freshwater macroalgaeAlgal Research 7, 58.65. doi: 10.1016/j.algal.2014.12.005
  23. Coles, R., Short, F., Fortes, M., & Kuo, J. (2014). Twenty years of seagrass networking and advancing seagrass science: The International Seagrass Biology Workshop Series. Pacific Conservation Biology 20(1), 8-16.
  24. Collier, C.J., Villacorta-Rath, C., van Dijk, K., Takahashi, M., & Waycott, M. (2014). Seagrass proliferation precedes mortality during hypo-salinity events: A stress-induced morphometric responsePLOSone 9. doi: 10.1371/journal.pone.0094014
  25. Collier, C.J., & Waycott, M. (2014). Temperature extremes reduce seagrass growth and induce mortalityMarine Pollution Bulletin 83, 483-490. doi: 10.1016/j.marpolbul.2014.03.050
  26. Datta, B. & Singh, D. (2014) Optimal groundwater monitoring network design for pollution plume estimation with active sources. International Journal of Geomate 6 (4), 864-869.
  27. Davis, A.M.Lewis, S.E.Brodie, J.E., & Benson, A. (2014) The potential benefits of herbicide regulation: A cautionary note for the Great Barrier Reef catchment areaScience of the Total Environment 490, 81-92.
  28. Davis, A.M., Unmack, P.J., Pusey, B.J., Pearson, R.P., & Morgan, D.M. (2014). Effects of an adaptive zone shift on morphological and ecological diversification in terapontid fishesEvolutionary Ecology 28, 205-227.
  29. Davis, A.M., Unmack, P.J., Pusey, B.J., Pearson, R.G., & Morgan, D.L. (2014) Evidence for a multi-peak adaptive landscape in the evolution of tropic morphology in terapontid fishesBiological Journal of the Linnean Society 113 623-634.
  30. Davis, B., Baker, R., & Sheaves, M. (2014) Seascape and metacommunity processes regulate fish assemblage structure in coastal wetlandsMarine Ecology Progress Series 500, 187-202.
  31. Davis, B., Mattone, C., Sheaves, M. (2014) Bottom-up control regulates patterns of fish connectivity and assemblage structure in coastal wetlandsMarine Ecology Progress Series 500, 175-186.
  32. DeBose, J.L., & Paul, V.J. (2014). Chemical signatures of multi-species foraging aggregations are attractive to fishMarine Ecology Progress Series 498, 243-248.
  33. Dell, A.I., Alford, R.A. & Pearson, R.G. (2014) Intermittent pool beds are permanent cyclic habitats with distinct wet, moist and dry phases. PlosOne PONE-D-14-18241R1.
  34. Ebner, B.C., Starrs, D. Morgan, D.L., Fulton, C.J., Donaldson, J.A., Doody, S., Cousins, S., Kennard, M., Butler, G., Tonkin, Z., Beatty, S., Broadhurst, B., Clear, R., & Fletcher, C. (2014) Emergence of underwater video for field based study of freshwater fish and crustacean ecology in AustraliaJournal of the Royal Society of Western Australia 97, 287-296.
  35. Edmunds, R.C., McIntyre, J.K., Luckenbach, J.A., Baldwin, D.H., & Incardona, J.P. (2014) Toward enhanced MIQE compliance: Reference residual normalization of qPCR gene expression data. Journal of Biomolecular Techniques 25, 54-60. doi: 10.7171/jbt.14-2502-003.
  36. Fabricius, K.E., Logan, M., Weeks, S. & Brodie, J. (2014). The effects of river run-off on water clarity across the central Great Barrier ReefMarine Pollution Bulletin 84, 191-200.
  37. Farrington, L.W., Mark Lintermans. M., Ebner, B.C. (2014). Characterising genetic diversity and effective population size in one reservoir and two riverine populations of the threatened Macquarie PerchConservation Genetics (published on-line Jan 2014).
  38. Flint, N., Crossland, M.R., & Pearson, R. (2014) Sublethal effects of fluctuating hypoxia on juvenile tropical Australian freshwater fish. Marine and Freshwater Research 66(4), 293-304. doi:10.1071/MF14120.
  39. Frisch, A.J., Ireland, M., & Baker, R. (2014) Trophic ecology of large predatory reef fishes: energy pathways, trophic level, and implications for fisheries in a changing climate. Marine Biology 161, 61-73. doi: 10.1007/s00227-013-2315-4.
  40. Gosch, B.J., Paul, N.A.de Nys, R., & Magnusson, M. (2014). Seasonal and within-plant variation in fatty acid content and composition in the brown seaweed Spatoglossum macrodontum (Dictyotales, Phaeophyceae). J Appl Phycol 27, 387-398. doi: 10.1007/s10811-014-0308-4.
  41. Hawdon, A., McJannet, D., & Wallace, J. (2014) Calibration and correction procedure for cosmic-ray neutron soil moisture probes located across AustraliaWater Resources Research 50, 1-15. doi: 10.1002/2013WR015138.
  42. Heithaus, M.R., Alcoverro, T., Arthur, R., Burkholder, D.A., Coates, K.A., Christianen, M.J.A., Kelkar, N., Manuel, S.A., Wirsing, A.J., Judson Kenworthy, W., & Fourqurean, J.W. (2014) Seagrasses in the age of sea turtle conservation and shark overfishingFrontiers in Marine Science 1 28, 1-6. doi: 10.3399/fmars.2014.00028.
  43. Hutchinson, N., Jenkins, G.P., Brown, A., & Smith, T.M. (2014). Variation with depth in temperate seagrass-associated fish assemblages in Southern Victoria, AustraliaEstuaries and Coasts 37, 801-814. doi: 10.1007/s12237-013-9742-9.
  44. Huth, N.I., Banabas, M., Nelson, P.N., & Webb, M. (2014) Development of an oil palm cropping systems model: Lessons learned and future directionsEnvironmental Modelling & Software 62, 411-419.
  45. Januchowski-Hartley, S.R., Pearson, R.G., Puschendorf, R., & Rayner, T. (2014). Fresh Waters and Fish Diversity: Distribution, Protection and Disturbance in Tropical AustraliaPLOSone 6, 1-11.
  46. Jarvis, J.C., Brush. M.J., & Moore, K.A. (2014). Modeling loss and recovery of Zostera marina beds in the Chesapeake Bay: The role of seedlings and seed-bank viabilityAquatic Botany 113, 32-45.
  47. Jarvis, J.C. & Moore, K.A. (2014). Effects of seed source, sediment type, and burial depth on mixed-annual and perennial Zostera marina L. seed germination and seedling establishmentEstuaries and Coasts 38, 964-978. doi: 10.1007/s12237-014-9869-3.
  48. Jarvis, J.C., Moore, K.A., & Judson Kenworthy, W. (2014) Persistence of Zostera marina L. (eelgrass) seeds in the sediment seed bank. Journal of Experimental Marine Biology and Ecology 459, 126-136. 
  49. Jha, M.K., & Datta, B. (2014) Linked simulation-optimization based dedicated monitoring network design for unknown pollutant source identification using dynamic time warping distance. Water Resources Management 28 (12), 4161-4182. doi: 10.1007/s11269-014-073.
  50. Johansson, C.L., Paul, N.A.de Nys, R., & Roberts, D.A. (2014). The complexity of biosorption treatments for oxyanions in a multi-element mine effluentJournal of Environmental Management 151, 386-392.
  51. Karim, F., Kinsey-Henderson, A., Wallace, J., Godfrey, P., Arthington, A.H., & Pearson, R.G. (2014). Modelling hydrological connectivity of tropical floodplain wetlands via a combined natural and artificial stream network. Hydrological Processes 28, 5696-5710. doi: 10.1002/hyp.10065.
  52. Kaserzon, S.L., Hawker, D.W., Booij, K., O’Brien, D.S., Kennedy, K., Vermeirssen, E.L.M., & Mueller, J.F. (2014) Passive sampling of perfluorinated chemicals in water: In-Situ calibration. Environmental Pollution 186, 98-103.
  53. Langlois, L., & Hoogenboom, M.O. (2014) Capacity for short-term physiological acclimation to light does not control the lower depth distributions of branching coralsMarine Ecology Progress Series 508, 149-162.
  54. Lewis, S.E. Olley, J. Furuichi, T. Sharma, A. & Burton, J. (2014) Complex sediment deposition history on a wide continental shelf: implications for the calculation of accumulation rates on the Great Barrier ReefEarth and Planetary Science Letters393, 146-158.
  55. Lo, E.Y., Duke, N.C. & Sun. M. (2014) Phylogeographic pattern of Rhizophora (Rhizophoraceae) reveals the importance of both vicariance and long-distance oceanic dispersal to modern mangrove distributionBMC Evolutionary Biology 14(83).
  56. Lough, J.M., Llewellyn, L.E., Lewis, S.E., Turney, C.S.M., Palmer, J.G., Cook, C.G., & Hogg, A.G. (2014) Evidence for suppressed mid-Holocene northeastern Australian monsoon variability from coral luminescencePaleoceanography, 1-14. doi: 10.1002/2014PA002630.
  57. Mackay, S.J., Arthington, A.H., & James, C.S. (2014) Classification and comparison of natural and altered flow regimes to support an Australian trial of the ecological limits of hydrologic alteration frameworkEcohydrology. doi: 10.1002/eco.1473.
  58. MacReadie, P.I., Schliep, M.T., Rasheed, M.A.Chartrand, K.M. & Ralph, P.J. (2014). Molecular indicators of chronic seagrass stress: A new era in the management of seagrass ecosystems. Ecological Indicators 38, 279-281.
  59. MacReadie, P.I., York, P.H., & Sherman, C.D.H. (2014) Resilience of Zostera muelleri seagrass to small-scale disturbances: the relative importance of asexual versus sexual recoveryEcology and Evolution 450-461.
  60. MacReadie, P.I., York, P.H., Sherman, C.D.H., Keough, M.J., Ross, D.J., Ricart, A.M., & Smith, T.M. (2014). No detectable impact of small-scale disturbances on ‘blue carbon’ within seagrass bedsMarine Biology 161 2939-2944. doi: 10.1007/s00227-014-2558-8.
  61. McJannet, D., Marvanek, S., Kinsey-Henderson, A., Petheram, C., & Wallace, J. (2014) Persistence of in-stream waterholes in ephemeral rivers of tropical northern Australia and potential impacts of climate changeMarine and Freshwater Research.doi: 10.1071/MF14035.
  62. McKenzie, L.J.Yoshida, R.L. & Unsworth, R.K.F. (2014) Disturbance influences the invasion of a seagrass into an existing meadowMarine Pollution Bulletin 86, 186-196. doi: 10.1016/j.marpolbul.2014.07.019.
  63. McLeod, I.M., Parsons, D.M., Morrison, M.A., Van Dijken, S.G., Taylor, R.B. (2014) Mussel reefs on soft sediments: a severely reduced but important habitat for macroinvertebrates and fishes in New ZealandNew Zealand Journal of Marine and Freshwater Research, 48 48-59.
  64. Moosdorf, N., Stieglitz, T., Waska, H., Durr, H.H., & Hartmann, J. (2014) Submarine groundwater discharge from tropical islands: a reviewGrundwasser – Zeitschrift der Fachsektion Hydrogeologie. doi 10.1007/s00767-014-0275-3.
  65. Morgan, D.L. Unmack, P.J., Beatty, S.J., Ebner, B.C., Allen, M.G., Keleher, J.J., Donaldson, J.A., & Murphy, J. (2014) An overview of the ‘freshwater fishes’ of Western AustraliaJournal of the Royal Society of Western Australia 97, 263-278.
  66. Moran, L. Severeyn, H. & Barrios-Garrido, H. (2014) Moluscos bivalvos perforadores de rocas coralinas submareales de la alta Guajira, Golfo De VenezuelaInterciencia 39(2), 136-139.
  67. O’Grady, D., Leblanc, M. (2014). Radar mapping of broad-scale inundation: challenges and opportunities in AustraliaStochastic Environmental Research and Risk Assessment 28, 29-38.
  68. O’Grady, D., Leblanc, M., Bass, A. (2014). The use of radar satellite data from multiple incidence angles improves surface water mappingRemote Sensing and the Environment 140, 652-664.
  69. Oliver, D.P., Anderson, J.S., Davis, A., Lewis, S., Brodie, J. & Kookana, R. (2014). Banded applications are highly effective in minimising herbicide migration from furrow-irrigated sugar caneScience of the Total Environment 466-467, 841-848.
  70. Pascoe, S., Doshi, A., Thebaud, A., Thomas, C.R., Schuttenberg, H.Z., Heron, F.H., Setiashi, N., Tan, J.C.H., True, J., Wallmo, K., Loper, C. & Calgaro, E. (2014). Estimating the potential impact of entry fees for marine parks on dive tourism in South East AsiaMarine Policy 47, 147-152.
  71. Pearson, R.G. (2014) Dynamics of invertebrate diversity in a tropical streamDiversity 6, 771-791. doi: 10.3390/d604771.
  72. Pecl, G.T., Ward, T.M., Doubleday, Z.A., Clarke, S., Day, J., Dixon, C., Frusher, S., Gibbs, P., Hobday, A.J., Hutchinson, N., Jennings, S., Jones, K., Li, X., Spooner, D., & Stoklosa, R. (2014). Rapid assessment of fisheries species sensitivity to climate changeClimatic Change. doi: 10.1007/s10584-014-1284-z.
  73. Petus, C., Collier, C., Devlin, M., Rasheed, M & McKenna, S. (2014). Using MODIS data for understanding changes in seagrass meadow health: a case study in the Great Barrier Reef (Australia). Marine Environmental Research 98, 68-85.
  74. Petus, C.Teixeira da Silva, E., Devlin, M., Wenger, A. & Álvarez-Romero, J. G. (2014). Using MODIS data for mapping of water types within river plumes in the Great Barrier Reef, Australia: towards the production of river plume risk maps for reef and seagrass ecosystemsJournal of Environmental Management 137163-177.
  75. Petus, C., Marieu, V., Novoa, S., Chust, G., Bruneau, N. and Froidefond, J.M (2014). Monitoring spatio-temporal variability of the Adour River turbid plume (Bay of Biscay, France) with MODIS 250-m imagery. Continental Shelf Research 74, 34-49.
  76. Prakash, O., & Datta, B. (2014) Characterization of groundwater pollution sources with unknown release time historyJournal of Water Resource and Protection 6 (4), 337-350. doi: 10.4236/jwarp.2014.64036.
  77. Prakash, O., & Datta, B. (2014) Encapsulating the role of solution response space roughness on global optimal solution: application in identification of unknown groundwater pollution sources. Open Journal of Optimization 3, 26-41. doi: 10.4236/ojop.2014.33004.
  78. Prakash, O., & Datta, B. (2014) Optimal monitoring network design for efficient identification of unknown groundwater pollution sources. International Journal of Geomate 6(1), 785-790.
  79. Rasheed, M.A., McKenna, S.A., Carter, A.B. and Coles, R.G. (2014). Contrasting recovery of shallow and deep water seagrass communities following climate associated losses in tropical north Queensland, AustraliaMarine Pollution Bulletin83(2), 491-499.
  80. Roberts, D.A. Paul, N.A., Dworjanyn, S.A., Hu, Y., Bird, M.I., & de Nys, R. (2014). Gracilaria waste biomass (sampah rumput laut) as bioresource for selenium biosorptionJ Appl Phycol 27, 611-620. doi: 10.1007/s10811-014-0346-y.
  81. Sarda, R., O’Higgings, T., Cormier, R., Diedrich, A., & Tintore, J. (2014) A proposed Marine Ecosystem-Based Management System – Linking the Theory of Environmental Policy and Practice of Environmental Management. Ecology and Society, 19(4): 51.   http://dx.doi.org/10.5751/ES-07055-190451
  82. Sawyer, A.H., Lazareva, O., Kroeger, K.D., Crespo, K., Chan, C.S., Stieglitz, T., & Michael, H.A. (2014). Stratigraphic controls on fluid and solute fluxes across the sediment-water interface of an estuaryLimnol. Oceanogr, 59(3): 997-1010. doi: 10.4319/lo.2014.59.3.0997.
  83. Severino G. Salmo III, Lovelock, C.E. & Duke, N.C. (2014) Assessment of vegetation and soil conditions in restored mangroves interrupted by severe tropical typhoon ‘Chan-hom’ in the PhilippinesHydrobiologia, 1-18. doi: 10.1007/s10750-013-1766-4.
  84. Sheaves, M., Brookes, J., Coles, R., Freckleton, M., Groves, P., Johnston, R., Winberg, P. (2014). Repairs and revitalisation of Australia’s tropical estuaries and coastal wetlands: opportunities and constraints for the reinstatement of lost function and productivityMarine Policy, 47: 23-38.
  85. Sheaves, M., Baker, R.Nagelkerken, I. & Connolly, R.M. (2014) The true value of estuarine and coastal nurseries for fish: incorporating complexity and dynamicsEstuaries and Coasts. doi: 10.1007/s12237-014-9846-x.
  86. Shimada, T., Aoki, S., Kameda, K., Hazel, J., Reich, K., Kamezaki, N. (2014) Site fidelity, ontogenetic shift and diet composition of green turtles Chelonia mydas in Japan inferred from stable isotope analysisEndangered Species Research25:151-164 doi: 10.3354/esr00616.
  87. Short, S.T., Coles, R., Fortes, M.D., Victor, S., Salik, M., Isnain, R., Andrew, J., & Seno, A. (2014) Monitoring in the Western Pacific region shows evidence of seagrass decline in line with global trendsMarine Pollution Bulletin, 83(2):408-416.
  88. Spalding, M.D., McIvor, A.L., Beck, M.W., Koch, E.W., Moller, I., Reed, D.J., Robinoff, P., Spencer, T., Tolhurst, T.J., Wamsley, T.V., van Wesenbeeck, B.K., Wolanski, E., & Woodroffe, C.D. (2014). Coastal ecosystems: a critical element of risk reduction. Conservation Letters 7(3), 293-201. doi: 10.1111/conl.12074.
  89. Sreekanth, J., & Datta, B. (2014) Design of an optimal compliance monitoring network and feedback information for adaptive management of saltwater intrusion in coastal aquifers. Journal of Water Resources Planning and Management 140(1), 1-10. doi: 10.1061/(ASCE)WR.1943-5452.0000406. 
  90. Sreekanth, J., & Datta, B. (2014) Stochastic and robust multi-objective optimal management of pumping from coastal aquifers under parameter uncertainty. Water Resources Management 28(7), 2005-2019. doi: 10.1007/s11269-014-0591-5.
  91. Starrs, D., Ebner, B.C., et al. (2014). Longevity in maternal transmission of isotopic marks in a tropical freshwater rainbowfish and the implications for offspring morphologyMarine and Freshwater Research (published on-line 15 Nov 2013).
  92. Starrs, D., Davis, J.T., Schlaefer, J., Ebner, B.C., Eggins, S.M., & Fulton, C.J. (2014). Maternally transmitted isotopes and their effects on larval fish: a validation of dual isotopic marks within a meta-analysis contextCanadian Journal of Fisheries and Aquatic Science 71, 387-397.
  93. Stehfest, K.M., Patterson, T.A., Barnett, A., & Semmens, J.M. (2014) Markov models and network analysis reveal sex-specific differences in the space-use of a coastal apex predatorNordic Society Oikos 1-14. doi: 10.1111/oik.01429
  94. Su, N. (2014). Mass-time and space-time fractional partial differential equations of water movement in soils: Theoretical framework and application to infiltrationJournal of Hydrology 519, 1792-1803. doi: 10.1016/j.jhydrol.2014.09.021.
  95. Su, N., Venkatraman, K., & Ashwath, N. (2014) Temperature fluctuations in a landfill in response to periodic changes in surface and tide-driven groundwater temperaturesInternational Journal of Waste Resources 4:3. doi: 10.4172/2252-5211.1000148.
  96. Thomas, J., Lambrechts, J., Wolanski, E., Tragg, V.A., Blondel, V.D., Deleersnijder, D., Hanert, E. (2014). Numerical modelling and graph theory tools to study ecological connectivity in the Great Barrier ReefEcological Modelling 272, 160-174.
  97. Trave, C., & Sheaves, M. (2014) Bimini Islands: a characterization of the two major nursery areas; status and perspectivesSpringer Plus 3:270.
  98. Trave, C., & Sheaves, M. (2014) Ecotone analysis: assessing the impact of vehicle transit on saltmarsh crab population and ecosystemSpringer Plus 3:655.
  99. Unsworth, R.K.F., van Keulen, M., Coles, R.G. (2014) Seagrass meadows in a globally changing environmentMarine Pollution Bulletin (Editorial)83(2), 383-386.
  100. Van Dijk, K., Mellors, J., & Waycott, M. (2014) Development of multiplex microsatellite PCR panels for the seagrass Thalassia Hemprichii (Hydrocharitaceae). Applications in Plant Sciences 2(11), 1-5. doi:10.3732/apps.1400078.
  101. Venter, O., Fuller, R.A., Segan, D.B., Carwardine, J., Brooks, T., Butchart, S.H.M., Di Marco, M., Iwamura, T., Joseph, L., O’Grady, D., Possingham, H.P., Rondinini, C., Smith, R.J., Venter, M., & Watson, J.E.M. (2014) Targeting global protected area expansion for imperiled biodiversity. PLOS Biology 12(6), 1-7. doi: 10.1371/journal.pbio.1001891.
  102. Waltham, N.J., Barry, M., MacAlister, T., Weber, T., & Groth, D. (2014) Protecting the green behind the gold: Catchment-wide restoration efforts necessary to achieve nutrient and sediment load reduction targets in Gold Coast City, AustraliaEnvironmental Management 54, 840-851. doi: 10.1007/s00267-014-0330-y. 
  103. Waltham, N.J., Hughes, J.M., & Davie, P.F. (2014) Freshwater crabs occupying tropical north Queensland coastal creeksAustralian Zoologist.  June 10.7882/AZ.2014.005.
  104. Waltham, N.J., Reichelt-Brushett, A., McCann, D., & Eyre, B.D. (2014) Water and sediment quality, nutrient biochemistry and pollution loads in an urban freshwater lake: balancing human and ecological servicesEnvironmental Science Process & Impacts 16, 2804-2813.
  105. Welsh, S.A., Jerry, D.R. & Burrows, D.W. (2014) A new species of freshwater eel-tailed catfish of the genus Tandanus(Teleostei: Plotosidae) from the Wet Tropics Region of Eastern AustraliaCopeia 1, 136-142.
  106. Wenger, A.S., McCormick, M.I., Endo, G.G.K., McLeod, I.M., Kroon, F., & Jones, G.P.(2014) Suspended sediment prolongs larval development in a coral reef fishJournal of Experimental Biology.
  107. Whitehead, P.W., & Nelson, P.N. (2014) Displacement of the Great Divide in north Queensland associated with Neogene lava flowsAustralian Journal of Earth Sciences 61, 803-809. doi: 10.1080/08120099.2014.927788.
  108. Wolanski, E., & Kingsford, M.J. (2014) Oceanographic and behavioural assumptions in models of the fate of coral and coral reef fish larvaeJournal of the Royal Society: Interface11, 20140209.
  109. Wood, A., Booth, D.T., & Limpus, C.J. (2014). Sun exposure, nest temperature and loggerhead turtle hatchlings: Implications for beach shading management strategies at sea turtle rookeriesJournal of Experimental Marine Biology and Ecology 451, 105-114.
  110. Yaakub, S.M., McKenzie, L.J., Erftemeijer, P.L.A., Bouma, T., & Todd, P.A. (2014) Courage under fire: Seagrass persistence adjacent to a highly urbanised city–state. Marine Pollution Bulletin 83, 417-424.
  111. Yu, W., Yao, T., Lewis, S., Tian, L., Ma, Y., Xu, B., & Qu, D. (2014) Stable oxygen isotope differences between the areas to the north and south of Qinling Mountains in China reveal different moisture sourcesInternational Journal of Climatology 34, 1760-1772. doi: 10.1002/joc.3799.


  1. Alvarez-Romero, J.G., Devlin, M., Teixeira da Silva, E., Petus, C., Ban, N.C., Pressey, R.L., Kool, J., Roberts, J., Cerdeira-Estrada, S., Wenger, A.S. & Brodie, J. (2013). A novel approach to model exposure of coastal-marine ecosystems to riverine flood plumes based on remote sensing techniquesJournal of Environmental Management 119, 194-207.
  2. Amirabdollahian, M., & Datta, B. (2013) Identification of contaminant source characteristics and monitoring network design in groundwater aquifers: An overviewJournal of Environmental Protection 4, 26-41. doi: 10.4236/jep.2013.45A004.
  3. Andutta, F.P., Ridd, P.V. & Wolanski, E. (2013). The age and the flushing time of the Great Barrier Reef watersContinental Shelf Research 53, 11-19.
  4. Baker, R., Fry, B., Rozas, L.P., & Minello, T.J. (2013) Hydrodynamic regulation of salt marsh contributions to aquatic food webs. Marine Ecology Progress Series 490, 37-52. doi: 10.3354/meps10442.
  5. Bass, A.M.O’Grady, D., Berkin, C., LeBlanc, M.Tweed, S.Nelson, P.N. & Bird, M.I. (2013). High diurnal variation in dissolved inorganic C, S13C values and surface efflux of CO2 in a seasonal tropical floodplainEnvironmental Chemistry Letters 11 399-405.
  6. Barnett, A., Yick, J.L., Abrantes, K.G. & Awruch, C.A. (2013). Trophic ecology of an abundant predator and its relationship with fisheriesMarine Ecology Progress Series 409, 241-248.
  7. Bird, M.I., Hutley, L.B., Lawes, M.J., Lloyd, J., Luly, J.G., Ridd, P.V., Roberts, R.G., Ulm, S. & Wurster, C.M. (2013). Humans, megafauna and environmental change in tropical AustraliaJournal of Quaternary Science 9999 1-14.
  8. Broadhurst, B.T., Ebner, B.C., Lintermans, M., Thiem, J. D. & Clear, R. (2013)Jailbreak: A fishway releases the endangered Macquarie perch from confinement below an anthropogenic barrier. Marine and Freshwater Research 64, 900–908.
  9. Brooker, R.M., Munday, P.L., McLeod, I.M., Jones, G.P. (2013). Habitat preferences of a corallivorous reef fish: predation risk versus prey availabilityCoral Reefs 32, 613-622
  10. Bricker, S. & Devlin, M.J. (in press). Eutrophication: international comparisons of causes, consequences and management. Biogeochemistry.
  11. Brunnschweiler, J.M., Abrantes, K.G. & Barnett A. (2013) Long-term changes in species composition and relative abundances of sharks at a provisioning site. PLoS ONE 9(1): e86682. doi:10.1371/journal.pone.0086682.
  12. Calver, M.C., Beatty, S.J., Bryant, K.A. Dickman, C.R. Ebner, B.C. & Morgan, D.L. (2013). Users beware: implications of database errors when assessing the individual research records of ecologists and conservation biologists. Pacific Conservation Biology 19, 320-330.
  13. Chong, C., Edwards, W., Pearson, R. & Waycott, M. (2013) Sprouting and genetic structure vary with flood disturbance in the tropical riverine paperbark tree, Melaleuca Leucadendra (Myrtaceae). American Journal of Botany 100(11) 2250-2260.
  14. Connolly, N.M., Pearson, R.G., (2013) Nutrient enrichment of a heterotropic stream alters leaf litter nutritional quality and shredder physiological condition via the microbial pathwayHydrobiologia 718 85-92. doi:10.1007/s10750-013-1605-7.
  15. Cooke, S.J, Midwood, J.D, Thiem, J.D, Klimley, A.P, Lucas, M.C, Thorstad, E.B., Eiler, J., Holbrook, C. & EbnerB.C. (2013). Tracking animals in freshwater with electronic tags: past, present and futureAnimal Biotelemetry On-line first.
  16. Dale, A., Vella, K., Pressey, R.L., Brodie, J., Yorkston, H. & Potts, R. (2013). Risk analysis across governance systems: A Great Barrier Reef case studyEnvironmental Letters 8. doi:10.1088/1748-9326/8/1/015037.
  17. Datta, B., Prakash, R., Campbell, S. & Escalada, G. (2013) Efficient identification of unknown groundwater pollution sources using linked simulation-optimization incorporating monitoring location impact factor and frequency factor. Water Resources Management 27, 4959-4976. doi: 10.1007/s11269-013-0451-8.
  18. Davis, A.M., Thorburn, P.J., Lewis, S.E., Bainbridge, Z.T., Attard, S.J., Milla, R. & Brodie, J.E. (2013). Environmental impacts of irrigated sugarcane production: herbicide run-off dynamics from farms and associated drainage systems. Agriculture, Ecosystems and Environment. doi:org/10.1016/j.agee.2011.06.019.
  19. Davis, A.M., Unmack, P.J., Pusey, B.J., Pearson, R.G., Morgan, D.L. (2013) Effects of an adaptive zone shift on morphological and ecological diversification in terapontid fishesEvolutionary Ecology 28 205-227. doi: 10.1007/s10682-013-9671-x.
  20. Davis, A.M., Unmack, P.J., Pusey, B.J., Pearson, R.G., & Morgan, D.L. (2013). Ontogenetic development of intestinal length and relationships to diet in an Australasian fish family (Terapontidae). BMC Evolutionary Biology 13, 53.
  21. DeBose, J.L., Nuttall, M.F., Hickerson, E.L. & Schmahl, G.P. (2013). A high-latitude coral community with an uncertain future: Stetson Bank, Northwestern Gulf of MexicoCoral Reefs 32, 255-267. doi: 10.1007/s00338-012-0971.
  22. Devlin, M.J. & Parker, E.R. (in press). Historic perspective on riverine nutrient loads to the Thames and Liverpool Bay marine areas: implications for land-use management. ICES.
  23. Devlin, M.J.Brodie, J.E.Wenger, A.S.da Silva, E.Alvarez-Romero, J.G., Waterhouse, J. & McKenzie, L. (in press). Chronic and acute influences on the Great Barrier Reef: putting extreme weather conditions in context.
  24. Devlin, M.J., da Silva, E.T., Petus. C., Wenger, A.S., Zeh D., Tracey, D., Álvarez-Romero, J.G. & Brodie. J. (2013). Combining in-situ water quality and remotely sensed data across spatial and temporal scales to measure variability in wet season chlorophyll-a: Great Barrier Reef lagoon (Queensland, Australia). Ecological Processes 2, 31.
  25. Devlin, M.J.Debose, J. & Ajani, P. (in press). Variability in phytoplankton biomass and community over wet season conditions in the Great Barrier Reef. Making the linkages to COTS. Estuarine Coast and Shelf Science.
  26. Donaldson, J.A.Ebner, B.C. & Fulton, C.J. (2013). Flow velocity underpins microhabitat selectivity in amphidromous gobies of the Australian Wet TropicsFreshwater Biology 58, 1038–1051.
  27. Doubleday, Z. A., Clarke, S., Li, X., Pecl, G. T., Ward, T.M., Battaglene, S., Frusher, S., Gibbs, P.J., Hobday, A.J., Hutchinson, N., Jennings, S.M. & Stoklosa, R. (2013). Assessing the risk of climate change to aquaculture: a case study from south-east AustraliaAquaculture Environment Interactions 3, 163-175.
  28. Dowe, J.L., Noblick, L.R., Reed, S. & Dowe, A.J. (in press). The influence of soil and abiotic habitat factors on stem and leaf size variability in Sabal palmetto (Arecaceae) in Florida. Journal of the Torrey Botanical Society.
  29. Dunn, R.J., Robertson, D., Teasdale, P.R., Waltham, N.J., & Welsh D.T. (2013). Benthic metabolism and nitrogen dynamics in an urbanised tidal creek: Domination of DNRA over denitrification as a nitrate reduction pathwayEstuarine, Coastal and Shelf Science 131, 271-281.
  30. Ebner, B.C. & Morgan, D.L. (2013). Using remote underwater video to estimate freshwater fish species richnessJournal of Fish Biology82, 1592–1612.
  31. Fisher, D.O., Johnson, C.N., Lawes, M.J., Fritz, S.A., McCallum, H., Blomberg, S.P., VanDerWal, J., Abbott, B.A., Legge, S., Letnic, M., Thomas, C.R., Fisher, A., Gordon, I.J. & Kutt, A. (2013). The current decline of tropical marsupials in Australia: is history repeating? Global Ecology and Biogeography23, 181-190.
  32. Foden, W.B., Butchart, S.H.M., Stuart S.N., Vie ́, J., H., Akcakaya, R., Angulo A., DeVantier L.M., Gutsche A., Turak E., Cao L., Donner S.D., Katariya V., Bernard R., Holland, R.A., Hughes, A.F., O’Hanlon, S.E., Garnett, S. T., Sekercioglu, C.H. & Mace, G.M. (2013). Identifying the world’s most climate change vulnerable species: a systematic trait-based assessment of all birds, amphibians and corals. PLoS One 8 (6): e65427. Doi10.1271/journal.pone.0065427.
  33. Grech, A., Bos, M., Brodie, J.Coles, R., Dale, A., Gilbert, R., Hamann, M.Marsh, H., Neil, K., Pressey, R.L., Rasheed, M.A., Sheaves, M. & Smith, A. (2013). Guiding principles for the improved governance of port and shipping impacts in the Great Barrier ReefMarine Pollution Bulletin 75 8-20.
  34. Hazel, J., Hamann, M. and Lawler, I.R. (2013). Home range of immature green turtles tracked at an offshore tropical reef using automated passive acoustic technologyMarine Biology.
  35. Hoeke, R.K., Storlazzi, C.D. & Ridd, P.V. (2013). Drivers of circulation in a fringing coral reef embayment: A wave-flow coupled numerical modeling study of Hanalei Bay, HawaiiContinental Shelf Research 58 79-95.
  36. Hutchinson, N., Jenkins, G.P., Brown, A. and Smith, T.M. (2013). Variation with depth in temperate seagrass associated fish assemblages in southern Victoria, Australia. Estuaries and Coasts. doi: 10.1007/s12237-013-9742-9.
  37. Incardona, J.P., Swarts, T.L., Edmunds, R.C., Linbo, T.L., Aquilana-Beck, A., Sloan, C.A., Gardner, L.D., Block, B.A., & Scholz, N.L. (2013) Exxon Valdez to Deepwater Horizon: Comparable toxicity of both crude oils to fish early life stages.Aquatic Toxicology 142-143, 303-316. doi: 10.1016/j.aquatox.2013.08.011.
  38. Karim, F., Kinsey-Henderson, A., Wallace, J., Godfrey, P., Arthington, A.H. & Pearson, R. (2013). Modelling hydrological connectivity of tropical floodplain wetlands via a combined natural and artificial stream network. Hydrological Processes. doi: 10.1002/hyp.10065.
  39. Jha, M., & Datta, B. (2013) Three-dimensional groundwater contamination source identification using adaptive simulated annealing. Journal of Hydrologic Engineering 18(3), 307-317. doi: 10.1061/(ASCE)HE.1943-5584.0000624. 
  40. King, J., Alexander, F. & Brodie, J.E(2013). Regulation of pesticides in Australia: the Great Barrier Reef as a case study for evaluating effectivenessAgriculture, Ecosystems and Environment 180 54-67. doi: 10.1016/j.agee.2012.07.001.
  41. Lewis, S.E., Sloss, C.R., Murray-Wallace, C.V., Woodroffe, C.D. & Smithers, S.G. (2013). Post-glacial sea-level changes around the Australian margin: a review. Quaternary Science Reviews 74, 115-138. doi: 10/1016/j.quascirev.2012.09.006.
  42. Lewis, S.E.Bainbridge, Z.T., Kuhnert, P.M., Sherman, B.S., Henderson, B., Dougall, C., Cooper, M. & BrodieJ.E. (2013). Calculating sediment trapping efficiencies for reservoirs in tropical settings: a case study from the Burdekin Falls Dam, NE Australia. Water Resources Research 49, 1-13. doi: 10.1002/wrcr.20117.
  43. MacDonald, R.K., Ridd, P.V., Whinney, J.C., Larcombe, P. & Neil, D.T. (2013). Towards environmental management of water turbidity within open coastal water of the Great Barrier ReefMarine Pollution Bulletin 74 82-94.
  44. Mackay, A.K., Taylor, M.P., Munksgaard, N.C., Hudson-Edwards, K.A. & Burn-Nunes, L. (2013). Identification of environmental lead sources and pathways in a mining and smelting town: Mount Isa, AustraliaEnvironmental Pollution 180, 304-311.
  45. Mallela, J. Lewis, S.E. & Croke, B. (2013). Coral skeletons provide historical evidence of phosphorus runoff on the Great Barrier ReefPlosOne.
  46. McLeod, I.M., Rummer, J.L., Clark, T.D., Jones, G.P.McCormick, M.I., Wenger, A.S., Munday, P.L. (2013). Climate change and the performance of larval coral reef fishes: the interaction between temperature and food availability. Conservation Physiology 1. doi: 10.1093/consphys/cot24.
  47. Munksgaard, N.C., Davies, K., Wurster, C.M., Bass, A.M. & Bird, M.I. (2013). Field-based cavity ring-down spectrometry of 13C in soil-respired CO2Isotopes in Environmental and Health Studies 42 232-242.
  48. Munksgaard, N.C., & Lottermoser, B.G. (2013). Phosphate amendment of metalliferous tailings, Cannington Ag–Pb–Zn mine, Australia: implications for the capping of tailings storage facilitiesEnvironmental Earth Sciences 68 33-44.
  49. Nagelkerken, I., Sheaves, M., Baker, R., & Connolly, R.M. (2013) The seascape nursery: A novel spatial approach to identify and manage nurseries for coastal marine fauna. Fish and Fisheries 16, 362-371. doi: 10.1111.faf.12057.
  50. Nguyen, H.H., McAlpine, C. Pullar, D., Johansen, K. & Duke, N.C. (2013). The relationship of spatial-temporal changes in fringe mangrove extent and adjacent land-use: Case study of Kien Giang coast, VietnamOcean & Coastal Management 76, 12-22.
  51. O’Grady, D.Leblanc, M. & Gillieson, D. (2013). Relationship of local incidence angle with satellite radar backscatter for different surface conditionsInternational Journal of Applied Earth Observation and Geoinformation 24 42-53.
  52. Orpin, A.R. & Ridd, P.V. (2013). Exposure of inshore corals to suspended sediments due to wave-resuspension and river plumes in the central Great Barrier Reef: A reappraisalContinental Shelf Research 47 55-67.
  53. Pearson, R.C, Godfrey, P.C., Arthington, A.H., Wallace, J. Karim, F. & Ellison, M. (2013). Biophysical status of remnant freshwater floodplain lagoons in the Great Barrier Reef catchment: a challenge for assessment and monitoring. Marine and Freshwater Research 64 208-222.
  54. Petrou, K., Jimenez-Denness, I., Chartrand, K.McCormack, C.Rasheed, M. & Ralph P. J. (2013). Seasonal heterogeneity in the photophysiological response to air exposure in two tropical intertidal seagrass speciesMarine Ecological Progress Series 482 93-106.
  55. Petus, C., Lewis, M., & White, D. (2013). Monitoring temporal dynamics of Dalhousie Springs vegetation with MODIS Normalized Difference Vegetation IndexEcological Indicators, 34: 41-52.
  56. Prakash, O., & Datta, B. (2013) Sequential optimal monitoring network design and iterative spatial estimation of pollutant concentration for identification of unknown groundwater pollution source locations. Environmental Monitoring and Assessment185, 5611-5626. doi: 10.1007/s10661-012-2971-8.
  57. Pusey, B.J., Burrows, D.W., Bentley, A. & Perna, C.N. (In press). Revision of Hephaestus fuliginosus with the redescription of a new species. Journal of Fish Biology.
  58. Reeves, J.M., Bostock, H.C., Ayliffe, L.K., Barrows, T.T., De Deckker, P., Devriendt, L.S., Dunbar, G.B., Drysdale, R.N., Fitzsimmons, K.E., Gagan, M.K., Griffiths, M.L., Haberle, S.G., Jansen, J.D., Krause, C.E., Lewis, S.E., McGregor, H.V., Mooney, S.D., Moss, P., Nanson, G., Purcell, A. & van der Kaars, S. (2013). Palaeoenvironmental change in tropical Australasia over the last 30 000 years- A synthesis by the OZ-INTIMATE groupQuaternary Science Reviews, 1-14. doi: 10.1016/j.quascirev.2013.01.001.
  59. Ridd, P.V.da Silva, E.T. & Stieglitz, T. (2013). Have coral calcification rates slowed in the last twenty years? Marine Geology 346 392-399.
  60. Ridd, P.V., Larcombe, P., Stieglitz, T. & Orpin, A. (2013). Comment on “Towards ecologically relevant targets for river pollutant loads to the Great Barrier Reef” by F.J. KroonMarine Pollution Bulletin 66 259-262.
  61. Ryan, K., Lintermans, M., Ebner, B.C., & Norris, R.H. (2013). Using fine-scale overlap in predator-prey distribution for assessing risk to a threatened Macquarie perch populationFreshwater Science. 32, 1057–1072.
  62. Russel, D.J., Thuesen, P.A., Thomson, F.E., & Power, T.N. (2013). Is stocking barramundi (Lates calcarifer) in north-eastern Queensland a threat to aquatic biodiversity? Marine and Freshwater Research, 64. 992-1002.
  63. Salmo III, S.G., Lovelock, C. and. Duke, N.C (2013). Vegetation and soil characteristics as indicators of restoration trajectories in restored mangrovesHydrobiologia 720, 1-18.
  64. Seoane, L., Ramillien, G., Frappart, F., Leblanc, M. (2013). Regional GRACE-based estimates of water mass variations over Australia: Validation and interpretationHydrology and Earth System Sciences 17 4925-4939.
  65. Sheaves, M., Johnston, R., Johnson, A., Baker, R., & Connolly, R.M. (2013) Nursery function drives temporal patterns in fish assemblage structure in four tropical estuaries. Estuaries and Coasts 36, 893-905. doi: 10.1007/s12237-013-9610-7.
  66. Spalding, M.D., McIvor, A.L., Beck, M.W., Koch, E.W., Moller, I., Reed, D.J., Rubinoff, P., Spencer, T., Tolhurst T.,  Wamsley, T.V., van Wesenbeeck B.K., Wolanski, E. & Woodroffe, C.D. (2013). Coastal ecosystems: a critical element of risk reduction.Conservation Letters 7(3), 293-301. doi: 10.1111/conl.12074
  67. Smith, T.M., G.P. Jenkins & Hutchinson, N. (2013). Seagrass edge effects on fish assemblages in deep and shallow habitatsEstuarine, Coastal and Shelf Science 115: 291-299.
  68. Starrs, D., Ebner, B.C., & Fulton, C.J. (2013). Can back-calculation models unravel complex larval freshwater fish growth histories? Journal of Fish Biology 83, 96–110.
  69. Stieglitz, T.C., Clark, J.F. & Hancock, G.J. (2013). The mangrove pump: the tidal flushing of animal burrows in a tropical mangrove forest determined from radionuclide budgetsGeochimica et cosmochimica acta, 102, 12-22.
  70. Stieglitz, T., Waterson, P. (2013). Impact of Cyclone Yasi on the Wreck of the SS Yongala Documented by Comparative Multibeam Bathymetry Analysis. Queensland Archeological Research, 16 33-44.
  71. Taylor, R.G., Scanlon, B., Döll, P., Rodell, M., Van Beek, R., Wada, Y., Longuevergne, L., Leblanc, M.et al. (2013). Ground water and climate changeNature Climate Change 3 322-329.
  72. Thiem, J.D., Broadhurst, B.T., Lintermans, M., Ebner, B.C., Clear, R.C., & Wright, D. (2013). Seasonal differences in the diel movements of Macquarie perch (Macquaria australasica) in an upland reservoir. Ecology of Freshwater Fish 22, 145–156. doi: 10.1111/eff.12012.
  73. Tsatsaros, J.H., Brodie, J.E., Bohnet, I.C., & Valentine, P. (2013). Water quality degradation of coastal waterways in the Wet Tropics, AustraliaWater, Air, and Soil Pollution, 224:1443. doi: 10.1007/s11270-013-1443-2.
  74. Wallace, J., Macfarlane, C., McJannet, D., Ellis, T., Grigg, A. & van Dijk, A. (2013.) Evaluation of forest interception estimation in the continental scale Australian Water Resources Assessment – Landscape (AWRA-L) model. Journal of Hydrology 499, 210-223.
  75. Wallace, J. & McJannet, D. (2013). How might Australian rainforest cloud interception respond to climate changeJournal of Hydrology 481, 85-95. doi: 10.1016/j.jhydrol.2012.12.028.
  76. Waltham, N.J. & Connolly R.M. (2013). Artificial tidal lakes: Built for humans, home to fishEcological Engineering, 60, 414-420.
  77. Waltham, N.J., Teasdale, P.R., & Connolly, R.M. (2013). Use of flathead mullet (Mugil cephalus) in coastal biomonitor studies: review and recommendations for future studies.  Marine Pollution Bulletin 69, 195-205.
  78. Wenger, A.S., Devlin, M., Petus, C., & da Silva, E.T. (in press). Extreme weather monitoring in the Great Barrier Reef. The wet season of 2010-11. Estuarine Coast and Shelf Science.
  79. Wenger, A.S., McCormick, M.I., McLeod, I.M., Jones, G.P. (2013). Suspended sediment alters predator-prey interactions between two coral reef fishesCoral Reefs 32, 369-374.
  80. Wilson, J., & Devlin, M. (2013). Nutrients, food web and tropho-dynamic processesEstuarine, Coastal and Shelf Science.
  81. Wolanski, E., Lambrechts, J., Thomas, C., & Deleersnijder, E. (2013). The net water circulation through Torres StraitContinental Shelf Research 64, 66-74.
  82. Wood, A.L., Butler, J. R., Sheaves, M. & Wani, J. (2013). Sport fisheries: opportunities and challenges for diversifying coastal livelihoods in the PacificMarine Policy 42, 305.
  83. Xu, H., Wolanski, E. & Chen, Z. (2013). Suspended particulate matter affects the nutrient budget of turbid estuaries: Modification of the LOICZ model and application to the Yangtze EstuaryEstuarine, Coastal and Shelf Science 12759-62.
  84. York, P.H., Gruber, R.K., Hill, R., Ralph, P.J., Booth, D.J., & MacReadie, P.I. (2013). Physiological and Morphological Responses of the Temperate Seagrass Zostera muelleri to Multiple Stressors: Investigating the Interactive Effects of Light and TemperaturePLOS One 1-12.


  1. Andutta, F.P., Kingsford, M.J. & Wolanski, E. (2012). ‘Sticky water’ enables the retention of larvae in a reef mosaicEstuarine, Coastal and Shelf Science, 101: 54-63.
  2. Aswani, S., Christie, P., Nyawira, A., Muthiga, N., Mahon, R., Primavera, J.H., Cramer, L.A., Barbier, E.B., Granek, E.F., Kennedy, C., Wolanski, E. & Hacker, S. (2012). The way forward with ecosystem-based management in tropical contexts: reconciling with existing management systems. Marine Policy, 36 (1):1-10.
  3. Bass, A.M., Bird, M.I., Munksgaard, N.C. Wurster, C.M. (2012) ISO-CADICA: Isotopic – continuous, automated dissolved inorganic carbon analyser. Rapid Communications in Mass Spectrometry 26 639-644.
  4. Bainbridge, Z.T., Wolanski, E., Alvarez-Romero, J.G., Lewis, S.E. & Brodie, J.E. (2012). Fine sediment and nutrient dynamics related to particle size and floc formation in a Burdekin River flood plume, Australia. Marine Pollution Bulletin, 65(4-9): 236-248. doi:10.1016/j.marpolbul.2012.01.043.
  5. Broadhurst, B.T., Ebner, B.C., & Clear, R.C. (2012). A rock-ramp fishway expands nursery grounds of the endangered Macquarie perch Macquaria australasica. Australian Journal of Zoology, 60: 91–100.
  6. Broadhurst, B.T., Lintermans, M., Thiem, J.D., Ebner, B.C., Wright, D.W., & Clear, R. (2012). Spatial ecology and habitat use of two-spined blackfish Gadopsis bispinosus in an upland reservoirAquatic Ecology, 46: 297–309.
  7. Brodie, J.E., Kroon, F.J., Schaffelke, B., Wolanski, E., Lewis, S.E., Devlin, M.J., Bainbridge, Z.T., Waterhouse, J. &Davis, A.M. (2012). Terrestrial pollutant runoff to the Great Barrier Reef: an update of issues, priorities and management responsesMarine Pollution Bulletin, 65(4-9): 81-100. http://dx.doi.org/10.1016/ 791 j.marpolbul.2011.12.012.
  8. Brodie, J. & Waterhouse, J. (2012). A critical review of environmental management of the ‘not so Great’ Barrier ReefEstuarine, Coastal and Shelf Science, 104-105: 1-22doi:10.1016/j.ecss.2012.03.012
  9. Brodie, J.E., Wolanski, E., Lewis, S.E. & Bainbridge, Z.T. (2012). An assessment of residence times of land-sourced contaminants in the Great Barrier Reef Lagoon and the implications for management and reef recovery. Marine Pollution Bulletin, 65: 267-279. doi: 10.1016/j.marpolbul.2011.12.011.
  10. Cartwright, I., Weaver, T.R., Cendon, D.I., Fifield, L.K., Tweed, S.O., Petrides, B., Swane, I. (2012) Constraining groundwater flow, residence times, inter-aquifer mixing, and aquifer properties using environmental isotopes in the southeast Murray Basin, AustraliaApplied Geochemistry, 27 1698-1709.
  11. Carroll, C., Waters, D., Vardy, S., Silburn, D.M., Attard, S., Thornburn, P.J., Davis, A.M., Halpin, N., Schmidt, M., Wilson, B. & Clark, A. (2012). A paddock to reef monitoring and modelling framework for the Great Barrier Reef: paddock and catchment component. Marine Pollution Bulletin, 65: 136-149. doi:10.1016/j.marpolbul.2011.11.022.
  12. Collier, C.J., Waycott, M., & McKenzie, L. (2012). Light thresholds derived from seagrass loss in the coastal zone of the northern Great Barrier Reef, Australia. Ecological Indicators 23, 211–219. doi: 10.1016/j.ecolind.2012.04005.
  13. Davis, A.M. Blanchette, M.L., Pusey, B.J., Pearson, R.G. and Jardine, T.D. (2012). Gut-content and stable-isotope analyses provide complementary understanding of ontogenetic dietary shifts and trophic relationships among fishes in a tropical river. Freshwater Biology, 57: 2156-2172.
  14. Davis, A.M., Lewis, S.E., Bainbridge, Z.T., Glendenning, L.G., Turner, R.D.R. & Brodie, J.E. (2012). Dynamics of herbicide transport and partitioning under event flow conditions in the lower Burdekin region, AustraliaMarine Pollution Bulletin, 65: 182-193.
  15. Davis, A.M., Pusey, B.J. & Pearson, R.G. (2012). Trophic ecology of terapontid fishes (Pisces: Terapontidae): the role of morphology and ontogeny. Marine and Freshwater Research, 63: 128–141.
  16. Davis, A.M., Pusey, B.J. & Pearson, R.G. (2012). Contrasting intraspecific dietary shifts in two terapontid assemblages from Australia’s wet-dry tropics. Ecology of Freshwater Fish, 21: 42-56.
  17. Davis, A.M., Unmack, P.J., Pusey, B.J., Johnson, J.B., and Pearson, R.G. (2012). Marine-freshwater transitions are associated with the evolution of dietary diversification in terapontid grunters (Teleostei: Terapontidae)Journal of Evolutionary Biology,25: 1163-1179.
  18. Davis, B., Johnston, R., Baker, R., & Sheaves, M. (2012) Fish utilisation of wetland nurseries with complex hydrological connectivity. PLOS One 7(11). doi: 10.1371.journal.pone.0049107.
  19. Devlin, M.J., McKinna, L.W., Alvarez-Romero, J.G., Petus, C., Abott, B., Harkness, P., & Brodie, J.E. (2012). Mapping the pollutants in surface riverine flood plume waters in the Great Barrier Reef, Australia. Marine Pollution Bulletin, 65: 224-235.
  20. Devlin, M.J. & Schaffelke, B. (2012). Catchment to Reef continuum: case studies from the Great Barrier ReefMarine Pollution Bulletin, 65: 77-80.
  21. Dunn, R.J.K., Welsh, D.T., Jordan, M.A., Waltham, N.J., Lemckert C.J., & Teasdale, P.R. (2012). Benthic metabolism and nitrogen dynamics in a sub-tropical coastal lagoon: microphytobenthos stimulate nitrification and nitrate reduction through photosynthetic oxygen evolution. Estuarine Coastal and Shelf Science, 113: 272-282.
  22. Edmunds, R.C., Smith-Keune, C., van Herwerden, L., Fulton, C.J., & Jerry, D.J. (2012) Exposing local adaptation: synergistic stressors elicit population-specific lactate dehydrogenase-B (Idh-b) expression profiles in Australian barramundi, Lates calcarifer. Aquatic Sciences 74, 171/178. doi: 10.1007/s00027-011-0208-5.
  23. Fulton, C. J, Starrs, D., Ruibal, M. P. & Ebner, B. C. (2012). Counting crayfish: active searching and baited cameras trump conventional hoop netting in detecting Euastacus armatus. Endangered Species Research 19, 39–45 doi:10.3354/esr00460
  24. Golbuu, Y., Wolanski, E., Idechong, J.W., Victor, S., Isechal, A.L., Oldiais, N.W., Idip, D., Richmond, R.H. & van Woesik, R. (2012). Predicting coral recruitment in Palau’s complex reef archipelagoPLOS One, 7: 11:e50998.
  25. Grech, A., Chartrand-Miller, K., Erftemeijer, P., Fonseca, M., McKenzie, L., Rasheed, M.A., Taylor, H. & Coles, R. (2012). A comparison of threats, vulnerabilities and management approaches in global seagrass bioregions. Environmental Research Letters, 7(2): 024006 (8pp) doi:10.1088/1748-9326/7/2/024006
  26. Kennedy, K., Devlin, M.J., Bentley, C., Lee-Chue, K., Paxman, C., Carter, S., Lewis,S., Brodie, J.E., Guy, E., Vardy, S., Martin, K.C., Jones, A., Packett, R. &Mueller, J.F. (2012). The influence of a season of extreme wet weather events on exposure of the World Heritage Area Great Barrier Reef to pesticides. Marine Pollution Bulletin, 64: 1495-1507.
  27. Kennedy, K., Schroeder, T., Shaw, M., Haynes, D., Lewis, S., Bentley, C., Paxman, C., Carter., Brando, V., Bartkow., Hearn, L. & Mueller, J. (2012). Long-term monitoring of photosystem-II herbicides – correlation with remotely sensed freshwater extent to monitor changes in the quality of water entering the Great Barrier Reef, Australia. Marine Pollution Bulletin, 65: 292-305.
  28. Kihwele, E., Mnaya, B., Meng’ataki, G., Birkett, C. & Wolanski, E. (2012). The role of vegetation in the water budget of the Usangu wetlands, Tanzania. Wetlands Ecology and Management, 20: 389-398.
  29. Kroon, F.J., Kuhnert, P.M., Henderson, B.L., Wilkinson, S.N., Kinsey-Henderson, A., Abbott, B., Brodie, J.E. & Turner, R.D. (2012). River loads of suspended solids, nitrogen, phosphorus and herbicides delivered to the Great Barrier Reef lagoon. Marine Pollution Bulletin, 65 (4-9): 167-181. doi:10.1016/j.marpolbul.2011.10.018
  30. Kuhnert, P., Henderson, B., Lewis, S.E., Bainbridge, Z.T., Wilkinson, S. & Brodie, J.E. (2012). Quantifying total suspended sediment export from the Burdekin River catchment using the Loads Regression Estimator Tool. Water Resources Research, 48: W04533. doi:10.1029/2011WR011080.
  31. Lemoalle, J., Bader, J., Leblanc, M., Sedick, A. (2012) Recent changes in Lake Chad: Observations, simulations and management options (1973–2011). Global and Environmental Change, 80-81: 247-254.
  32. Lewis, S.E., Brodie, J.E., McCulloch, M., Mallela, J., Jupiter, S., Williams, H., Lough, J., & Matson, E. (2012). An assessment of an environmental gradient using coral geochemical records, Whitsunday Islands, Great Barrier Reef, Australia. Marine Pollution Bulletin, 65: 306–319.
  33. Lewis, S.E., Schaffelke, B., Shaw, M., Bainbridge, Z.T., Rohde, K., Kennedy, K., Davis, A.M., Masters, B.L., Devlin, M.J., Mueller, J.F. & Brodie, J.E. (2012). Assessing the additive risks of PSII herbicide exposure to the Great Barrier Reef. Marine Pollution Bulletin, 65: 280-291.
  34. Lewis, S.E., Wust, R.A., Webster, J.M., Shields, G.A., Renema, W., Lough, J.M. & Jacobsen, G. (2012). Development of an inshore fringing coral reef using textural, compositional and stratigraphic data from Magnetic Island, Great Barrier Reef, Australia. Marine Geology, 299-302: 18-32.
  35. McLeod, I.M., Parsons, D.M., Morrison, M.A., Le Port, A., Taylor, R.B. (2012). Factors affecting the recovery of soft-sediment mussel reefs in the Firth of Thames, New Zealand. Marine and Freshwater Research 63, 78-83.
  36. Minello, T.J., Rozas, L.P., & Baker, R. (2012) Geographic variability in salt marsh flooding patterns may affect nursery value for fishery species. Estuaries and Coasts 35, 501-514. doi: 10.1007/s12237-011-9463-x.
  37. Muunksgaard, N.C., Lottermoser, B.G., Blake, K. (2012) Prolonged testing of metal mobility in mining-testing soils amended with phosphate fertilisers. Water, Air and Soil Pollution 223 2237-2255.
  38. Muunksgaard, N.C., Wurster, C.M., Bass, A., Zagorshis, I. Bird, M.I. (2012) First continuous shipboard d18O and dD measurements in sea water by diffusion sampling—cavity ring-down spectrometry. Environmental Chemistry Letters 10 301-307.
  39. Novoa, S., Chust, G., Froidefond, J.M., Petus, C., Franco, J., Orive, E., Seoane, S., & Borja, A. (2012) Water quality monitoring in Basque coastal areas using local chlorophyll-a algorithm and MERIS imagesJournal of Applied Remote Sensing6, 1-27. doi: 10.1117/1.jrs.6.063519.
  40. O’Brien, D., Komarova, T., & Mueller, J.F. (2012) Determination of deployment specific chemical uptake rates for SPMD and PDMS using a passive flow monitor. Marine Pollution Bulletin 64, 1005-1011.
  41. Pandovan, A., Munksgaard, N., Alvarez, B., McGuinness, K., Parry, D., Gibb, K. (2012) Trace metal concentrations in the tropical sponge Spheciospongia vagabunda at a sewage outfall: synchrotron X-ray imaging reveals the micron-scale distribution of accumulated metals. Hydrobiologia 687 275-288.
  42. Perna, C.N., Cappo, M., Pusey, B.J. & Burrows, D.W. & Pearson, R.G. (2012). Removal of aquatic weeds greatly enhances fish community richness and diversity: an example from the Burdekin River floodplain, tropical Australia. River Research and Applications, 28(8): 1093-1104
  43. Rivier, A., Gohin, F., Bryère, P., Petus, C., Guillou, N. & Chapalain, G, (2012). Observed vs. predicted variability in non-algal suspended particulate matter concentration in the English Channel in relation to tides and waves. Geo-Marine Letters, 32(2): 139-151. DOI: 10.1007/s00367-011-0271-x
  44. Schroeder, T., Devlin, M., Brando, V.E., Dekker, A.G., Brodie, J.E., Clementson, L & McKinna, L. (2012). Inter-annual variability of wet season freshwater plume extent into the Great Barrier Reef lagoon based on satellite coastal ocean colour observations. Marine Pollution Bulletin, 65: 210-223
  45. Shaw, C.M., Brodie, J.E. & Mueller, J.F. (2012). Phytotoxicity induced in isolated zooxanthellae by herbicides extracted from Great Barrier Reef flood waters. Marine Pollution Bulletin, 65: 355-362.  doi:10.1016/j.marpolbul.2012.01.037
  46. Su, N. (2012) Distributed-order infiltration, absorption and water exchange in mobile and immobile zones of swelling soils. Journal of Hydrology 468-469, 1-10. doi: 10.1016/j.jhydrol.2012.07.033.
  47. Unsworth, R.K.F., Collier, C.J., Henderson, G.M. & McKenzie, L.J. (2012). Tropical seagrass meadows modify seawater carbon chemistry: implications for coral reefs impacted by ocean acidification. Environmental Research Letters, 7: 024026. doi: 10.1088/1748-9326/7/2/024026.
  48. Unsworth, R.K.F, Rasheed, M.A., Chartrand, K.M. and Roelofs, A.J. (2012) Solar radiation and tidal exposure as environmental drivers of Enhalus acoroides dominated seagrass meadows. PLOS One, 7(3): e34133. doi:10.1371/journal.pone.0034133.
  49. Wallace, J. & McJannet, D. (2012). Climate change impacts on the water balance of coastal and montane rainforests in northern Queensland, AustraliaJournal of Hydrology, 475: 84-96. doi: 10.1016/j.jhydrol.2012.09.032.
  50. Waterhouse, J., Brodie, J.E., Lewis, S.E. & Mitchell, A. (2012). Quantifying the source of pollutants in the Great Barrier Reef catchments and the relative risk to reef ecosystems. Marine Pollution Bulletin, 65: 394-406.
  51. Webster, A.J., Bartley, R., Armour, J.D., Brodie, J.E. & Thornburn, P.J. (2012). Reducing dissolved inorganic nitrogen in surface runoff water from sugarcane production systems. Marine Pollution Bulletin, 65: 128-135.
  52. Wenger, A.S., Johansen, J.L. & Jones, G.P. (2012). Increasing suspended sediment reduces foraging, growth and condition of a planktivorous damselfish. Journal of Experimental Marine Biology and Ecology, 428: 43-48.


  1. Andutta, F.P., Ridd, P.V., Wolanski, E. (2011) Dynamics of hypersaline coastal waters in the Great Barrier Reef. Estuarine, Coastal and Shelf Science. 94:299-305.
  2. Baker, R., & Minello, T.J. (2011) Trade-offs between gear selectivity and logistics when sampling Nekton from shallow open water habitats: A gear comparison study. Gulf and Caribbean Research 23, 37-48. doi: 10.18785/qcr.2301.04.
  3. Baker, W.J., Norup, M.V., Clarkson, J.J., Couvreur, T.L.P., Dowe, J.L., Lewis, C.E., Pintaud, J.C., Savolainen, V., Wilmot, T. & Chase, M.W. (2011). Phylogenetic relationships among arecoid palms (Arecaceae: Arecoideae)Annals of Botany 108:1417-1432.
  4. Bohensky, E., Butler, J.R.A., Costanza, R., Bohnet, I., Delisle, A., Fabricius, K., Gooch, M., Kubiszewski, I., Lukacs, G., Pert, P. & Wolanski, E. (2011). Future makers or future takers? A scenario analysis of climate change and the Great Barrier ReefGlobal Environmental Change. 21:876-893.
  5. Bohnet, I.C., Roebeling, P.C., Williams, K.J., Holzworth, D., van Grieken, M.E., Pert, P.L. Kroon, F.J., Westcott, D.A. & Brodie, J.E. (2011). Landscapes Toolkit – an integrated modeling framework to assist stakeholders in exploring options for sustainable landscape developmentLandscape Ecology. 26:1179-1198.
  6. Bricker, S. & Devlin, M.J. (2011). Preface: “Eutrophication” issue of BiogeochemistryBiogeochemistry. 106:135-136.
  7. Brodie, J.E., Devlin, M.J., Haynes, D. & Waterhouse, J. (2011). Assessment of the eutrophication status of the Great Barrier Reef lagoon (Australia)Biogeochemistry. 106:281-302. doi: 10.1007/s10533-010-9542-2.
  8. Davis, A.M., Pearson, R.G., Pusey, B.J., Perna, C., Morgan, D.L. & Burrows, D.W. (2011). Trophic ecology of northern Australia’s terapontids: ontogenetic dietary shifts and feeding classification. Journal of Fish Biology. 78:265-286. doi: 10.1111/j.1095-8649.2010.02862.x
  9. Devlin, M.J., Bricker, S. & Painting, S. (2011). Comparison of five methods for assessing impacts of nutrient enrichment using estuarine case studiesBiogeochemistry. 106:177-205. doi: 10.1007/s10533-011-9588-9.
  10. Ebner, B.C., Kroll, B., Godfrey, P., Thuesen, P.A., Vallance, T., Pusey, B., Allen, G.R., Rayner, T.S. & Perna, C.N. Is the elusive Gymnothorax polyurandon really a freshwater moray? Journal of Fish Biology. 79:70-79. doi: 10.1111/j.1095-8649.2011.02987.x
  11. Ebner, B.C., Thuesen, P.A., Larson, H.K. & Keith, P. (2011). A review of distribution, field observations and precautionary conservation requirements for sicydiine gobies in AustraliaCybium, 35:397-414.
  12. Foden, J., Devlin, M.J., Mills, D.K. & Malcolm, S.J. (2011). Searching for undesirable disturbance: an application of the OSPAR eutrophication assessment method to marine waters of England and WalesBiogeochemistry. 106:157-175. doi: 10.1007/s10533-010-9475-9
  13. Gedan, K.B., Kirwan, M.L., Wolanski, E., Barbier, E. & Silliman, B.R. (2011). The present and future role of coastal wetland vegetation in protecting shorelines: answering recent challenges to the paradigmClimate Change. 106:7-29. DOI 10.1007/s10584-010-0003-7.
  14. Golbuu, Y., Wolanski, E., Harrison, P., Richmond, R.H., Victor, S. & Fabricius, K.E. (2011). Effects of land use change on characteristics and dynamics of watershed discharges in Babeldaob, Palau, MicronesiaJournal of Marine Biology. Article ID 981273 doi:10.1155/2011/981273.
  15. Gratani, M., Butler, J.R.A., Royee, F., Valentine, P., Burrows, D.W. & Canendo, W.I., Anderson, A.S. (2011). Is validation of indigenous ecological knowledge a disrespectful process? A case study of traditional fishing poisons and invasive fish management from the Wet Tropics, Australia. Ecology and Society. 16(3):25. doi: 10.5751/ES-04249-160325.
  16. Hamann, M., Grech, A., Wolanski, E. & Lambrechts, J. (2011). Modelling the fate of marine turtle hatchlingsEcological Modelling. 222:1515-1521.
  17. Hughes, T.P., Bellwood, D.R., Baird, A.H., Brodie, J. E., Bruno, J.F., Pandolfi, J.M. (2011). Shifting base-lines, declining coral cover, and the erosion of reef resilience. Comment on Sweatman et al. (2011). Coral Reefs. 30: 653-660. doi: 10.1007/s00338-011-0787-6
  18. Morgan, D.L., Allen, G.R., Pusey, B.J. & Burrows, D.W. (2011). A review of the freshwater fishes of the Kimberley region of western Australia. Zootaxa, 2816:1-64
  19. Perna, C.N., Cappo, M., Pusey, B.J., Burrows, D.W. & Pearson, R.G. (2011). Removal of aquatic weeds greatly enhances fish community richness and diversity: an example from the Burdekin River floodplain, tropical AustraliaRiver Research and Applications. 28: 1093-1104 doi: 10.1002/rra.1505


  1. Barfod, A.S., Dowe, J.L. & Suksathan, P. (2010). Major Jenkins’ fan palm in ThailandPalms. 54:109-118.
  2. Brodie, J.E., Schroeder, T., Rohde, K., Faithful, J.W., Masters, B., Dekker, A., Brando, V. & Maughan, M. (2010). Dispersal of suspended sediments and nutrients in the Great Barrier Reef lagoon during river discharge events: conclusions from satellite remote sensing and concurrent flood plume sampling. Marine and Freshwater Research. 61:651-664.
  3. Chen, Z., Yanagi, T. & Wolanski, E. (2010). EMECS8 – Harmonizing catchment and estuary. Estuarine, Coastal and Shelf Science, 86,v.
  4. Davis, A.M. & Pusey, B.J. (2010). Trophic polymorphism and water clarity in northern Australian Scortum (Pisces: Terapontidae)Ecology of Freshwater Fish, 19:638-643. doi: 10.1111/j.1600-0633.2010.00448.x
  5. Davis, A.M., Pusey, B.J., Thorburn, D.C., Dowe, J.L. Morgan, D.L. & Burrows, D.W. (2010). Riparian contributions to the diet of terapontid grunters (Pisces: Terapontidae) in wet-dry tropical rivers. Journal of Fish Biology, 76:862-879. doi: 10.1111/j.1095-8649.2010.02541.x
  6. Dobson, A.P., Borner, M., Sinclair, A.R., Hudson, P.J., Anderson, T.M., Deutsch, G., Durant, S.M., Estes, R.D., Fryxell, J., Foley, C., Holt, M.E., Homewood, K., Hopcraft, J.G., Hilborn, R., Jambiya, G.L., Ogutu, M.K., Schaller, G. & Wolanski, E. (2010). Road will ruin Serengeti. Letter in Nature. 467:272-273.
  7. Doupé, R.G. & Knott, M.J. (2010). Rapid digestion of fish prey by the highly invasive ‘detritivore’ Oreochromis mossambiscus. Journal of Fish Biology. 76:1019-1024. doi: 10.1111/j.1095-8649.2009.02531.x
  8. Doupé, R.G., Knott, M.J., Schaffer, J.R., Burrows, D.W. & Lymbery, A.J. (2010). Experimental herbivory of native Australian macrophytes by the introduced Mozambique tilapia, Oreochromis mossambicusAustral Ecology, 35:24-30. doi: 10.1111/j.1442-9993.2009.02008.x
  9. Doupé, R.G., Mitchell, J., Knott, M.J., Davis, A.M. & Lymbery, A.J. (2010). Efficacy of exclusion fencing to protect ephemeral floodplain lagoon habitats from feral pigs (Sus scrofa)Wetlands Ecology and Management. 18:69-78. doi: 10.1007/s11273-009-9149-3.
  10. Edmunds, R.C., van Herwerden, L., & Fulton, C.J. (2010) Population-specific locomotor phenotypes are displayed by barramundi, Lates calcarifer, in response to thermal stress. Canadian Journal of Fisheries and Aquatic Sciences 67, 1068-1074. doi: 10.1139/F10-047.
  11. Elisa, M., Gara, J.I., Wolanski, E. (2010). A review of the water crisis in Tanzania’s protected areas, with emphasis on the Katuma River – Lake Rukwa ecosystem. Ecohydrology and Hydriobiology, 10:153-166.
  12. Granek, E.F., Polasky, S., Kappel, C.V.,  Reed, D.J., Stoms, D.M., Koch, E.W., Kennedy, C.J., Cramer, L.A., Hacker, S.D., Barbier, E.B., Aswani, S., Ruckelshaus, M., Perillo, G.M.E., Silliman, B.R., Muthiga, N., Bael, D. & Wolanski, E. (2010). Ecosystem services as a common language for coastal ecosystem-based management. Conservation Biology, 24:207-216. doi: 10.1111/j.1523-1739.2009.01355.x
  13. Hefferman, J., Barry, J., Devlin, M.J. & Fryer, R. (2010). A simulation tool for designing nutrient monitoring programmes for eutrophication assessments. Environmetrics, 21:3-20.
  14. Lambrechts, J., Humphrey, C., McKinna, L., Gourge, O., Fabricius, K.E., Mehta, A.J., Lewis, S.E. & Wolanski, E. (2010). Importance of wave-induced bed liquefaction in the fine sediment budget of Cleveland Bay, Great Barrier ReefEstuarine, Coastal and Shelf Science, 89:154-162.
  15. Lewis, S.E., Henderson, R.A., Dickens, G.R., Shields, G.A. & Coxhell, S. (2010). The geochemistry of primary and weathered oil shale and coquina across the Julia Creek vanadium deposit, (Queensland, Australia)Mineralium Deposita, 45:599-620. doi: 10.1007/s00126-010-0287-6
  16. Lukacs, G. (2010). Building global collaboration in tropical wetland research. Wetlands Ecology and Management, 18:511-515. doi: 10.1007/s11273-010-9192-0
  17. Lukacs, G. & Finlayson, M. (2010). An evaluation of ecological information on Australia’s northern tropical rivers and wetlandsWetlands Ecology and Management, 18:597-625. doi: 10.1007/s11273-010-9197-8
  18. Lymbery, A.J., Hassan, M., Morgan, D.L., Beatty, S.J. &  Doupé, R.G. (2010). Parasites of native and exotic freshwater fishes in south-western AustraliaJournal of Fish Biology, 76:1770-1785. doi: 10.1111/j.1095-8649.2010.02615.x
  19. Nelson, P.N., & Su, N. (2010) Soil pH buffering capacity: a descriptive function and its application to some acidic tropical soilsAustralian Journal of Soil Research 48, 201-207. doi: 10.1071/SR09150
  20. Pert, P.L., Butler, J.R.A., Brodie, J.E., Bruce, C., Honzák, M., Kroon, F.J., Metcalfe, D., Mitchell, D. & Wong G. (2010). A catchment-based approach to mapping hydrological ecosystem services using riparian habitat: a case study from the Wet Tropics, Australia. In: Ecosystem services: bridging ecology, economy and the social sciences. Ecological Complexity, 7:378-388. doi: 10.1016/j.ecocom.2010.05.002
  21. Petus, C., Chust, G., Gohin, F., Doxaran, D., Froidefond, J., & Sagarminaga, Y. (2010). Estimating turbidity and total suspended matter in the Adour River plume (South Bay of Biscay) using MODIS 250-m imagery. Continental Shelf Research 30:379-392. doi: 10.1016/j.csr.2009.12.007
  22. Scott, C., Lewis, S.E., Milla, R., Taylor, M.C., Rogers, A.J.W., Dumsday, G., Brodie, J.E., Oakeshott, J.G. & Russell, R.J. (2010). A free-enzyme catalyst for the bioremediation of environmental altrazine contamination. Journal of Environmental Management, 91:2075-2078. doi:10.1016/j.jenvman.2010.05.007
  23. Siebert, S.J., Zobolo, A.M. & Dowe, J.L. (2010). Notes on African plants: Livistona chinensis, a first record of a naturalized palm in South AfricaBothalia, 40:55-57.
  24. Shenton, W., Hart, B.T. & Brodie, J.E. (2010). A Bayesian network model linking nutrient management actions in the Tully catchment (north Queensland) with Great Barrier Reef conditionMarine and Freshwater Research, 61:587-595. doi: 10.1071/MF09093
  25. Su, N. (2010) Theory of infiltration: Infiltration into swelling soils in a material coordinate. Journal of Hydrology 395, 103-108. doi: 10.1016/j.jhydrol.2010.10.019


  1. Bainbridge, Z.T., Brodie, J.E., Faithful, J.W., Sydes, D.A. & Lewis, S.E. (2009). Identifying the land-based sources of suspended sediments, nutrients and pesticides discharged to the Great Barrier Reef from the Tully-Murray Basin, Queensland, AustraliaMarine and Freshwater Research, 60:1081-1090.
  2. Brodie, J.E., Lewis, S.E., Bainbridge, Z.T., Mitchell, A., Waterhouse, J.& Kroon., F. (2009). Target setting for pollutant discharge management of rivers in the Great Barrier Reef catchment area. Marine and Freshwater Research, 60:1141-1149.
  3. Coles, R.McKenzie, L., De’ath, G., Roelofs, A., & Long, W.L. (2009) Spatial distribution of deepwater seagrass in the inter-reef lagoon of the Great Barrier Reef world heritage area. Marine Ecology Progress Series 392, 57-68.
  4. Davis, A.M. & Perna, C.N. (2009). Evidence of predation on terrestrial cane toads, Bufo marinus, by the sooty grunter, Hephaestus fuliginosus, in northern AustraliaNorthern Territory Naturalist, 21:45-48.
  5. Devlin, M.J., Barry, J., Mills, D.K., Gowen, J., Foden, J., Sivyer, D., Greenwood, N., Pearce, D. & Tett, P. (2009). Estimating the diffuse attenuation coefficient from optically active constituents in UK marine waters. Estuarine, Coastal and Shelf Science, 82:73-83.
  6. Devlin, M.J., Barry, J., Painting, S. & Best, M. (2009). Extending the phytoplankton tool kit for UK Water Framework Directive: indicators of phytoplankton community structure. Hydrobiologia, 633:151-168.
  7. Devlin, M.J. & Schaffelke, B. (2009). Spatial extent of riverine flood plumes and exposure of marine ecosystems in the Tully coastal region, Great Barrier ReefMarine and Freshwater Research, 60:1109-1122.
  8. Dowe, J.L. (2009). Archontophoenix (Arecaceae): description of species and notesThe Palm Journal, 102:4-11.
  9. Dowe, J.L. (2009). A preliminary note on the impact of Cyclone Larry on populations of Archontophoenix alexandrae (Arecaceae), north Queensland, AustraliaPalms & Cycads, 102:4–8.
  10. Dowe, J.L. (2009). A taxonomic account of Livistona (Arecaceae)Gardens’ Bulletin (Singapore), 60:185-344.
  11. Doupé, R.G., Knott, M.J., Schaffer, J.R. & Burrows, D.W. (2009). Investigational piscivory of some juvenile freshwater Australian fishes by the introduced Mozambique tilapia, Oreochromis mossambicusJournal of Fish Biology, 24:2386-2400.
  12. Doupé, R.G., Schaffer, J.R., Knott, M.J. & Burrows, D.W. (2009). How might an exotic fish disrupt spawning success in a sympatric native species? Marine and Freshwater Research, 60:379-383.
  13. Doupé, R.G., Schaffer, J.R., Knott, M.J. & Dicky, P.W. (2009). A description of freshwater turtle habitat destruction by foraging feral pigs in tropical north-eastern Australia. Herpetological Conservation and Biology, 4:331-339.
  14. Edmunds, R.C., Hillersoy, G., Momigliano, P., & van Herwerden, L. (2009) Classic approach revitalizes genomics: Complete characterization of a candidate gene for thermal adaptation in two coral reef fishes. Marine Genomics 2, 215-222. doi: 10.1016/j.margen.2009.11.001.
  15. Edmunds, R.C., van Herwerden, L., Smith-Keune, C., & Jerry, D.R. (2009) Comparative characterization of a temperature responsive gene (lactate dehydrogenase-B, Idh-b) in two congeneric tropical fish, Lates calcarifer and Lates niloticus.International Journal of Biological Sciences 5(6), 558-569. doi: 10.7150/ijbs.5.558.
  16. Gereta, E., Mwangomo, E., Wakibara, J. & Wolanski, E. (2009). Ecohydrology as a tool for the survival of the threatened Serengeti ecosystemEcohydrology and Hydrobiology, 9:115-124.
  17. Griffith, M.P., Dowe, J.L., Noblick, L.R. & Danielson, I.L. (2009). Archontophoenix at Montgomery Botanical Center. The Palm Journal, 192:12-14.
  18. Koch, E.W., Barbier, E.B., Silliman, B.R., Reed, D.J., Perillo, S.D., Granek, E.F., Primavera, N., Muthiga, S., Polasky, B.S., Halpern, B.S., Kennedy, C.J., Kappel, C.V. & Wolanski, E. (2009). Non-linearity in ecosystem services: temporal and spatial variability in coastal protection. Frontiers in Ecology and the Environment, 7:29-37.
  19. Kroon, F.J. & Brodie, J.E. (2009). Catchment management and health of coastal ecosystems: synthesis and future researchMarine and Freshwater Research, 60:1196-1200.
  20. Lankaster, A., Valentine, P. & Cottrell, A. (2009). ‘The sweeter country’: social dimensions to riparian management in the Burdekin rangelands, QueenslandAustralasian Journal of Environmental Management, 16:94-102.
  21. Lewis, S.E., Brodie, J.E., Bainbridge, Z.T., Rohde, K., Davis, A.M., Masters, B., Maughan, M., Devlin, M.J., Mueller, J. & Schaffelke, B. (2009). Herbicides: a new threat to the Great Barrier Reef. Environmental Pollution, 157:2470-2484.
  22. Maughan, M. & Brodie J.E. (2009). Reef exposure to river-borne contaminants: a spatial modelMarine and Freshwater Research, 60:1132-1140.
  23. Mitchell, A., Reghenzani, J., Faithful, J.W., Furnas, M. & Brodie, J.E. (2009). Relationships between land use and nutrient concentrations in streams draining a ‘wet-tropics’ catchment in northern AustraliaMarine and Freshwater Research, 60:1097-1108.
  24. Partridge, G.J., Jenkins, G.I., Doupé, R.G., de Lestang, S., Ginbey, B.M. & French, D. (2009). Factors affecting mark quality of alizarin complexone-stained otoliths in juvenile black bream Acanthopagrus butcheri and a prescription for dosage. Journal of Fish Biology, 75:1518-1523.
  25. Perna, C.N., Cappo, M., Burrows, D.W. & Pusey, B.J. (2009). Floodplain degradation and restoration in northern Queensland: the response of the alien fish pest, Gambusia holbrooki. Ecological Management and Restoration, 10:241-243.
  26. Schaffer, J.R., Doupé, R.G. & Lawler, I.R. (2009). What for the future of the Jardine River Painted Turtle? Pacific Conservation Biology, 15:92-95.
  27. Shapcott, A., Dowe, J.L. & Ford, H. (2009). Low genetic diversity and recovery implications of the vulnerable Bankouale Palm Livistona carinensis (Arecaceae) from north-eastern Africa and the southern Arabian Peninsula. Conservation Genetics, 10:317-327.
  28. Steiglitz T.C. & Waterson, P. (2013) Impact of Cyclone Yasi on the wreck of the SS Yongala documented by comparative multibeam bathymetry analysis. Queensland Archaeological Research 16:33-44.
  29. Su, N. (2009) Equations of anomalous absorption onto swelling porous media. Materials Letters 63, 2483-2485. doi: 10.1016/j.matlet.2009.08.039.
  30. Su, N. (2009) N-dimensional fractional Fokker-Planck equation and its solutions for anomalous radial two-phase flow in porous mediaApplied Mathematics and Computation 213, 506-515. doi: 10.1016/j.amc.2009.03.044.
  31. WolanskiE., Martinez, J.A. & Richmond, R.H. (2009). Quantifying the impact of watershed urbanization on a coral reef: Maunalua Bay, HawaiiEstuarine, Coastal and Shelf Science, 84:259-268.


  1. Amos, K.J., Croeke, J.C., Hughes, A.O., Chapman, J., Takken, I. & Lymburner, L. (2008). A catchment-scale assessment of anabrancing in the 143,000km2 Fitzroy River catchment, north-eastern Australia. Earth Surface Processes and Landforms, 38:1222-1241.
  2. Barbier, E.B., Koch, E.W., Silliman, B.R., Hacker, S.D., Wolanski, E., Primavera, J., Granek, E.F., Polasky, S., Aswani, S., Cramer, L.A., Stoms, D.M., Kennedy, C.J., Bael, D., Kappel, C.V., Perillo, G.M.E. & Reed, D.J. (2008). Coastal ecosystem-based management with non-linear ecological functions and values. Response. Science, 319:321-323.
  3. Barbier, E.B., Koch, E.W., Silliman, R., Hacker, D.D., Wolanski, E., Primavera, J., Granek, E.F., Polasky, S., Aswani, S., Cramer, L.A., Stoms, D.M., Kennedy, C.J., Bael, D., Kappel, C.V., Perillo, G.M.E. & Reed, D.J. (2008). Coastal ecosystem-based management with nonlinear ecological functions and values. E-Letter. Science, 2 October.
  4. Barbier, E.B., Koch, E.W., Silliman, B.R., Hacker, S.D., Wolanski, E., Primavera, J., Granek, E.F., Polasky, S., Aswani, S., Cramer, L.A., Stoms, D.M., Kennedy, C.J., Bael, D., Kappel, C.V., Perillo, G.M.E. & Reed, D.J. (2008).  Vegetation’s role in coastal protection: response. Science, 320:177.
  5. Cannicci, S., Burrows, D.W., Fratini, S., Lee, S.Y., Smith, T.J., Offenberg, J. & Dahdouh-Guebas, F. (2008).  Faunal impact on vegetation structure and ecosystem function in mangrove forests. Aquatic Botany, 89:186-200.
  6. Davis, A.M., Lewis, S.E., Bainbridge, Z.T., Brodie, J.E. & Shannon, E. (2008). Pesticide residues in waterways of the lower Burdekin region: challenges in ecotoxicological interpretation of monitoring dataAustralasian Journal of Ecotoxicology, 14:89-108.
  7. Davis, A.M. & Perna, C. (2009) Evidence for predation on terrestrial cane toads Bufo marinus by the sooty grunter Hephaestus fuliginosus in northern Australia. Northern Territory Naturalist 21: 45-48.
  8. Devlin, M.J., Foden, J., Sivyer, D., Mills, D., Gowen, R. & Tett, P. (2008). Relationships between suspended particulate material, light attenuation and Secchi depth in waters around the UK. Estuarine, Coastal and Shelf Science, 79:429-439.
  9. Doupé, R.G. & Burrows, D.W. (2008). Tilapia 30 years later, should we be more concerned for the ongoing invasion of Mozambique tilapia in Australia? Pacific Conservation Biology, 14:235-238.
  10. Foden, J., Sivyer, D., Mills, D. & Devlin, M.J. (2008). Spatial and temporal distribution of Chromophoric Dissolved Organic Matter (CDOM) fluorescence and its contribution to light attenuation in UK waterbodiesEstuarine Coastal and Shelf Science, 79:707-717.
  11. Gowen, R.J., Tett, P., Kennington, K., Mills, D.K., Shammon, T.M., Stewart, B.M., Greenwood, N., Flanagan, C., Devlin, M.J. & Wither, A. (2008). The Irish Sea, is it eutropic? Estuarine, Coastal and Shelf Science, 76:239-254.
  12. Griffith, M.P., Noblick, L.R., Dowe, J.L., Chad, E.H. & Michael, A.C. (2008). Cyclone tolerance in New World Arecaceae: biogeographic variation and abiotic natural selection. Annals of Botany, 102:591-598.
  13. Hassan, M., Beatty, S.J., Morgan, D.L., Doupé, R.G. & Lymbery, A.J. (2008). An introduced parasite, Lernea cyprinacea, found on native freshwater fish in the south west of Western AustraliaJournal of the Royal Society of Western Australia, 91:149-153.
  14. Kiwango, Y. & Wolanski, E. (2008). Papyrus wetlands, nutrients balance, fisheries collapse, food security and Lake Victoria level decline in 2000-2006Wetlands Ecology and Management, 16:89-96.
  15. Lambrechts, J., Hanert, E., Deleersnijder, E., Bernard, P.E., Legat, V., Remacle, J.F. & Wolanski, E. (2008). A multi-scale model of the hydrodynamics of the whole Great Barrier Reef. Estuarine, Coastal and Shelf Science, 79:143-151.
  16. Lewis, S.E., Wüst, R.A.J., Webster, J.M. & Shields G.A. (2008). Mid-late Holocene sea-level variability in eastern AustraliaTerra Nova, 20:74-81.
  17. Perna, C.N. & Pearson, R.G. (2008). Temporal dynamics of fish assemblages in small seasonal streams in the Queensland tropics. Australian Journal of Zoology, 56:65-73.
  18. Prebble, M. & Dowe, J.L. (2008). The late Quaternary decline and extinction of palms on oceanic Pacific islandsQuaternary Science Reviews, 27:2546-2567.
  19. Webb, A.C. (2008). Spatial and temporal influences on population dynamics of a branchiuran ectoparasite, Argulus, SP.A. in fresh waters of tropical northern Queensland, AustraliaCrustaceana, 81:1055-1067.
  20. White, L. & Wolanski, E. (2008). Flow separation and vertical motions in a tidal flow interacting with a shallow-water island. Estuarine Coastal and Shelf Science, 77:457-466.
  21. Wolanski, E., Fabricius, K., Cooper, T. & Humphrey, C. (2008). Wet season fine sediment dynamics on the inner shelf of the Great Barrier Reef. Estuarine, Coastal and Shelf Science, 77:755-762.


  1. Bite, J.S., Campbell, S.J., McKenzie, L.J., & Coles, R.G. (2007) Chlorophyll fluorescence measures of seagrasses Halophila ovalis and Zostera capricorni reveal differences in response to experimental shading. Marine Biology 152, 405-414. doi: 10.1007/s00227-007-0700-6.
  2. Brodie, J.E., De’ath, G., Devlin, M.J., Furnas, M. & Wright, M. (2007). Spatial and temporal patterns of near-surface chlorophyll in the Great Barrier Reef lagoonMarine and Freshwater Research, 58:342–353.
  3. Connolly, N.M. & Pearson, R.G. (2007). The effect of fine sedimentation on tropical stream macroinvertebrate assemblages: a comparison using flow-through artificial stream channels and recirculating mesocosmsHydrobiologia, 592:423–438.
  4. Devlin, M.J., Best, M. & Haynes, D. (Ed) (2007). Implementation of the Water Framework Directive in European Waters (special edition). Marine Pollution Bulletin. 55:1-6.
  5. Devlin, M.J., Best, M., Coates, D., Bresnan, E., Boyle, S., Park, R., Silke, J. & Skeats, J. (2007). Establishing boundary classes for classification of marine waters using phytoplankton communities – the first step in establishing a link between nutrient pressure and the marine plant community. Marine Pollution Bulletin, 55:91-104.
  6. Fairfax, R.J., Fensham, R., Wager, R., Brooks, S., Webb, A.C. & Unmack, P. (2007). Recovery of the red-finned blue-eye: an endangered fish from springs of the Great Artesian Basin. Wildlife Research, 32:156–166.
  7. Greiner, R. & Lankester, A. (2007). Supporting on-farm biodiversity conservation through debt-for conservation swaps: concept and critique. Land Use Policy, 24:458-471.
  8. Haynes, D.B., Brodie, J.E., Waterhouse, J., Bainbridge, Z.T., Bass, D. & Hart, B. (2007). Assessment of the water quality and ecosystem health of the Great Barrier Reef (Australia): conceptual models. Environmental Management, 40:993–1003.
  9. Lewis, S.E., Shields, G.A. Kamber, B.S. & Lough, J.M. (2007). A multi-trace element coral record of land-use changes in the Burdekin River catchment, N.E. Australia. Palaeogeography, Palaeoclimatology, Palaeoecology, 246:471-487.
  10. Möller, M., Lymburner, L. & Volk, M. (2007). The comparison index: A tool for assessing the accuracy of image segmentation. International Journal of Applied Earth Observation and Geoinformation, 9:311-321.
  11. Petus, C., Garcia Valencia, C., Thomas, Y.F., & Cesaracio, M. (2007). Study of the seasonal and interannual variability of the Guajira upwelling (Colombia) based on the analysis of AMI-Wind, SeaWinds and AVHRR satellite data. Etude de la resurgence de la Guajira, Colombie.
  12. Su, N. (2007) Radial water infiltration-advance-evaporation processes during irrigation using point source emitters in rigid and swelling soils. Journal of Hydrology 344, 190-197. doi: 10.1016/j.jhydrol.2007.07.005.
  13. Su, N. (2008) Erratum to “Radial water infiltration-advance-evaporation processes during irrigation using point source emitters in rigid and swelling soils” [J. Hydrol. 344 (3-4) (2007) 190-197]. Journal of Hydrology 360, 297. doi: 10.1016/j.jhydrol.2008.07.024.
  14. Su, N. (2007) Scale and time effects on mathematical models for transport in the environment. Appl. Math. J. Chinese Univ. Ser. B. 22(3): 267-276. doi: 10.1007/s11766-007-0303-5.
  15. Volk, M., Hirschfeld, J., Schmidt, G., Bohn, C., Dehnhardt, A, Liersch, S, & Lymburner, L. (2007). A SDSS-based ecological-economic modelling approach for integrated river basin management on different scale levels. The project FLUMAGIS. Water Resources Management, 21: 2049-2061.
  16. Webb, A.C. (2007). Status of non-native freshwater fishes in tropical northern Queensland, including establishment success, rates of spread, range and introduction pathways. Journal and Proceedings of the Royal Society of New South Wales, 140:63-78.


  1. Pusey. B., Burrows, D.W., Arthington, A. & Kennard, M.J. (2006). Translocation and spread of piscivorous fishes in the Burdekin River, north-eastern AustraliaBiological Invasions, 8:965-977.
  2. Wooldridge, S., Brodie, J.E. & Furnas, M. (2006). Exposure of inner-shelf reefs to nutrient enriched runoff entering the Great Barrier Reef Lagoon: post European changes and the design of water quality targets. Marine Pollution Bulletin, 52:1467–1479.


  1. Brodie, J.E., Fabricius, K., De’ath, G. & Okaji, K. (2005). Are increased nutrient inputs responsible for more outbreaks of crown-of-thorns starfish? An appraisal of the evidence. Marine Pollution Bulletin, 51:266–278.
  2. Brodie, J.E. & Mitchell, A.W. (2005). Nutrients in Australian tropical rivers: changes with agricultural development and implications for receiving environments. Marine and Freshwater Research, 56:279-302.
  3. Cappo, M.De’ath, G.Boyle, S.Aumend, J.Olbrich, R.Hoedt, F.Perna , C. & Brunskill, G. (2005). Development of a robust classifier of freshwater residence in barramundi (Lates calcarifer) life histories using elemental ratios in scales and boosted regression trees. Marine and Freshwater Research, 56:713-723.
  4. Chong, C.D. & Walker, K. (2005). Does lignum rely on a soil seed bank? Germination and reproductive phenology of Muehlenbeckia florulenta (Polygonaceae). Australian Journal of Botany, 53:407-415.
  5. Devlin, M.J. & Brodie, J.E. (2005). Terrestrial discharge into the Great Barrier Reef Lagoon: nutrient behavior in coastal waters. Marine Pollution Bulletin, 51:9-22.
  6. Faithful, J.W. & Finlayson, W. (2005) Water quality assessment for sustainable agriculture in the Wet Tropics – a community-assisted approach. Marine Pollution Bulletin, 51, 99–112.
  7. Frisch, A.J. (2005). Sex-change and gonadal steroids in sequentially-hermaphroditic teleost fish. Reviews in Fish Biology and Fisheries, 14:481–499.
  8. Frisch, A.J. & Anderson, T.A. (2005). Physiological stress responses of two species of coral trout (Plectropomus leopardus and Plectropomus maculatus). Comparative Biochemistry and Physiology A – Molecular and Integrative Physiology, 140:317–327.
  9. Furnas, M., Mitchell, A., Skuza, M. & Brodie, J.E. (2005). In the other 90%: phytoplankton responses to enhanced nutrient availability in the Great Barrier Reef. Marine Pollution Bulletin, 51:253-265.
  10. Greiner, R., Herr, A., Brodie, J.E. & Haynes, D.B. (2005). A multi-criteria approach to Great Barrier Reef catchment (Queensland, Australia) diffuse-source pollution problem. Marine Pollution Bulletin, 51:128-137.
  11. Keeling, S.M. & Werren, G.L. (2005). Phytoremediation: The Uptake of Metals and Metalloids by Rhodes Grass Grown on Metal-Contaminated soil. Remediation, 1:53-61.
  12. McKenna, S., Betts, D.A., Pong, W., Govedich, F. & Barton, D.P. (2005). A redescription of the Australian leech Placobdelloides bancrofti with new records of its distribution. Journal of Parasitology, 91:117-121.
  13. McKergow, L., Prosser, I.P., Hughes, A.O. & Brodie, J.E. (2005). Sources of sediment to the Great Barrier Reef World Heritage Area. Marine Pollution Bulletin, 51:200-211.
  14. McKergow, L., Prosser, I.P., Hughes, A.O. & Brodie, J.E. (2005). Regional scale nutrient modelling: exports to the Great Barrier Reef World Heritage Area. Marine Pollution Bulletin, 51:186-199.
  15. Mitchell, C., Brodie, J.E. & White, I. (2005). Sediments, nutrients and pesticide residues in event flow conditions in streams of the Mackay Whitsunday Region, Australia. Marine Pollution Bulletin, 51:23-36.
  16. Moss, A., Brodie, J.E. & Furnas, M. (2005). Water quality guidelines for the Great Barrier Reef World Heritage Area: a basis for development and preliminary values. Marine Pollution Bulletin, 51:76–88.
  17. O’Reagain, P.J., Brodie, J.E., Fraser, G., Bushell, J.J., Holloway, C., Faithful, J.W. & Haynes, D. (2005). Nutrient loss and water quality under extensive grazing in the upper Burdekin river catchment, North Queensland. Marine Pollution Bulletin, 51:37-50.
  18. Perna, C.N. & Burrows, D.W. (2005). Improved dissolved oxygen status following removal of exotic weed mats in important fish habitat lagoons of the tropical Burdekin River floodplain, Australia. Marine Pollution Bulletin, 51:138-148.


  1. Connolly, N.M., Crossland, M.R. & Pearson, R.G. (2004). Effect of low dissolved oxygen on survival, emergence, and drift of tropical stream macroinvertebrates. Journal of the North American Benthological Society, 23:251–270.
  2. Burrows, D.W. (2004). Aquatic Ecosystems. In: Healthy rangelands. Principles for sustainable systems. Focus on Australia’s Burdekin rangelands (eds: McCullough, M. & Musso, B.), 148-170. Tropical Savannas CRC, Darwin, Australia.
  3. Burrows, D.W. (2004). Translocated fishes in streams of the Wet Tropics Region, north Queensland: distribution and potential impact. Cooperative Research centre for Tropical Rainforest Ecology and Management. Rainforest CRC. Cairns, Australia.
  4. Dowe, J.L. (2004). Floristics of the Burdekin River catchment, Ludwig Leichhardt’s legacy, and taxonomic intrigues. Biologue, 14–18.
  5. Dowe, J.L. (2004). Taxonomic notes on palms (Arecaceae) in catalogues of the Brisbane Botanic Garden, Australia, of 1875 and 1885. Austrobaileya, 6:967–972.
  6. Dowe, J.L., Dixon, I. & Douglas, M. (2004). Trialling of the Tropical Rapid Appraisal of Riparian Condition method. In: RIPRAP River and Riparian Lands Management Newsletter (ed: Lovett, S.), 8 – 11. Land & Water Australia. Canberra, Australia.
  7. Dowe, J.L. & Jones, D.A. (2004). Nomenclatural changes for two Australian species of Livistona R. Br. (Arecaceae). Austrobaileya, 6:979–981.
  8. Dowe, J.L. & Mogea, J.P. (2004). New species of Livistona (Arecaceae) from New Guinea. Palms, 48:197-203.


  1. Pettit, N.E. & Dowe, J.L. (2003). Distribution and population structure of the vulnerable riparian palm Livistona lanuginosa A.N. Rodd (Arecaceae) in the Burdekin River catchment, north Queensland. Pacific Conservation Biology, 9:207-214.
  2. Williams, S.E., Bolitho, E.E. & Fox, S.J. (2003). Climate change on Australian tropical rainforests: an impending environmental catastrophe. Proceedings of the Royal Society of London Series B-Biological Sciences, 270:1887-1892.
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