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Science-based solutions to protect tropical ecosystems

New tools to guide Indigenous Rangers monitoring Sea Country

Indigenous Rangers and researchers from JCU TropWATER, Charles Darwin University, and Edith Cowan University have co-designed practical guides to give Rangers the skills they need to lead seagrass monitoring across northern Australia’s vast tropical meadows.


The new toolkit provides step-by-step videos and manuals for Rangers monitoring seagrass, building on long-standing partnerships that are supporting Rangers from WA to QLD to care for Sea Country.

14 Oct: Water quality and fertiliser trends across Great Barrier Reef catchments

WEBINAR: 1-2pm AEST Wednesday 14 October


New research shows encouraging news for water quality across many rivers that flow to the Great Barrier Reef alongside declines in fertiliser use.


This is good news for our waterways and the Reef, and reflects long-term efforts by farmers, extension officers, catchment managers, and government to improve water quality across the region.


Hear from the research team about how they brought together almost 40 years of water quality monitoring and over 100 years of fertiliser usage data to distinguish ongoing trends from short-term fluctuations.


View more details below and sign up to hear about upcoming webinars.

Cairns’ seagrass meadows have recovered, but are now home to different fish

A new study led by JCU TropWATER shows that seagrass meadows in Cairns Harbour are bouncing back more than ten years after major storms, but their fish communities have changed.


Flooding in 2009 and 2010 followed by Cyclone Yasi in 2011 caused significant damage to meadows in Cairns Harbour, leading to an 84% decline in fish abundance and 73% reduction in fish species richness.


TropWATER PhD student Darcy Philpott, who led the study, said this had major flow-on effects for the organisms that call seagrass meadows home.

Mapping benthic habitats of Marra Sea Country

Marra Sea Country in the western Gulf of Carpentaria is home to rich biodiversity, supported by a range of seafloor (benthic) habitats including seagrass, corals, mangroves, macroalgae, and saltmarsh.


Together with Marranbala and li-Anthawirriyarra Rangers and other project partners, our team is surveying marine habitats and providing hands-on technical training to help establish an ongoing Ranger-led monitoring program on Marra Sea Country.

What is a flood plume?

A flood plume – also known as a river plume – is a large volume of freshwater discharged from a river into the ocean, caused by heavy rainfall and flooding. Plumes can carry sediment, nutrients, pesticides and other contaminants from the land into coastal and marine waters.


Read our short Explainer for an introduction to what flood plumes are, how they affect marine ecosystems, and how we're working to monitor their impacts.

Our eDNA lab

As northern Australia's leading eDNA experts, we use genetic clues to revolutionise how to detect invasive and threatened species.


We’ve contributed to biosecurity surveillance, environmental impact assessments, tracking fish communities in Australian waterways, locating threatened species, and advancing eDNA science itself, while working with Traditional Owners, community groups, governments, councils and regional bodies. We also lead advances in eDNA techniques and offer commercial and research services.

Our research and projects

We provide industries, communities and governments with science-based solutions to better manage, protect and restore our tropical water ecosystems. Explore our research and projects.

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Wetlands and freshwater habitats

Our wetlands team use innovative and science-based solutions to restore, preserve, and rehabilitate coastal wetlands.

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Seagrass habitats

We house Australia's largest seagrass research group and have more than 40 years of experience in seagrass research and monitoring across the Great Barrier Reef, Great Sandy Strait and northern Australia.

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Mangroves

Our projects focus on monitoring, assessing, and restoring mangrove ecosystems to address environmental changes and impacts. We provide expert advice, conduct detailed floristic surveys, and develop effective mitigation strategies.

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Marine megafauna

We use a combination of conventional and innovative research using cutting-edge technology to monitor the trends in the abundance, distribution and habitat use of megafauna across Australia and globally.

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eDNA and technology

Technology is revolutionising the way scientists monitor, research and uncover new information about habitats and species. We are at the forefront of testing the feasibility of new technologies, including eDNA, drones and AI.

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Water quality: catchment to reef

We play a major role in monitoring the condition and tracking long-term trends of water quality entering the Great Barrier Reef. We work closely with cane farmers and graziers to help reduce runoff.

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Coral reef habitats

Our scientists undertake multiple monitoring programs to provide governments, industries and communities with essential data on the condition of coral habitats.

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Fish habitats

We monitor fish habitats and species in both freshwater and marine environments. This research monitors fish populations, tracks invasive fish species and helps understand fish communities.

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We are James Cook University's Centre for Tropical Water and Aquatic Ecosystem Research (TropWATER). We lead influential research on tropical water ecosystems across northern Australia, and beyond, contributing to their sustainable management and global understanding.

About us

Cairns’ seagrass meadows have recovered, but are now home to different fish

6 October 2026

Cairns’ seagrass meadows have recovered, but are now home to different fish

Latest survey raises concerns for dugong populations in the Gulf of Carpentaria

3 September 2026

Latest survey raises concerns for dugong populations in the Gulf of Carpentaria

From the lab to the field and everywhere in between with Brodie O’Breza

13 August 2026

From the lab to the field and everywhere in between with Brodie O’Breza

New tools to guide Indigenous Rangers monitoring Sea Country

31 July 2026

New tools to guide Indigenous Rangers monitoring Sea Country

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Our services and capabilities

We provide science-based solutions, stakeholder training, and innovative monitoring technologies. Our capabilities include water quality and eDNA labs, specialised training programs, technology development, and a range of environmental assessments and restoration efforts.

TropWATER researchers

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Led by Director Professor Damien Burrows, our centre includes 150 researchers and over 100 post-graduate students. Discover the passionate minds driving innovation in our field.

Our people

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