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Science-based solutions to protect tropical ecosystems

Establishing Ranger-led seagrass monitoring programs

Indigenous Ranger groups are well-positioned to lead monitoring and management of the extensive seagrass meadows of northern Australia. But for these programs to be effective, Rangers need resources and training to support a consistent and comprehensive approach to monitoring.


We have partnered with Indigenous Ranger groups across northern Australia to co-design seagrass monitoring programs, provide training in monitoring and data management skills, and create reference guides on how to monitor seagrass.


Establishing these Ranger-led monitoring programs will support Traditional Owner decision-making about local resources and management of Sea Country, help protect culturally and ecologically important habitats and species, and strengthen planning for long-term change.

What is eDNA?

Environmental DNA (eDNA) analysis is a powerful tool for addressing a range of ecological challenges. But what is it?


eDNA is genetic traces that organisms leave behind in the environments where they live, including in the water, soil, and air. We can sample these environments and extract the DNA to identify if a particular species is present, or a range of related species.


Our researchers are applying this method to improve biosecurity, assess biodiversity with citizen scientists, and detect endangered species.

Measuring the benefits of multispecies cover crops in sugarcane

Using rotational   cropping, such as legumes, can help replace the soil nutrients while reducing   the reliance on synthetic fertilisers and maintaining sugarcane crop health   and productivity.
 

To assess how multispecies cropping can improve outcomes for Australian   sugarcane farms, we are running trials to measure the effects of multispecies   cover crops on crop productivity, soil health, and biodiversity.

This project will provide practical, region-specific data for growers on using   multispecies cover cropping for sustainable sugarcane production and improved   soil health and biodiversity.

Why reef conservation runs on strong relationships

Conservation efforts are occurring across local to regional scales to support the health and resilience of the Great Barrier Reef – but individual efforts need to be connected to achieve lasting impact.


In our latest guest blog, Dr Katie Chartrand shares her experiences connecting tourism operators, Traditional Owners, researchers, and non-profits working to care for the reef in her role coordinating the Cairns-Port Douglas Reef Hub with Dr Abbi Scott.

Our research and projects

We provide industries, communities and governments with science-based solutions to better manage, protect and restore our tropical water ecosystems. Explore our research and projects.

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Wetlands and freshwater habitats

Our wetlands team use innovative and science-based solutions to restore, preserve, and rehabilitate coastal wetlands.

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Seagrass habitats

We house Australia's largest seagrass research group and have more than 40 years of experience in seagrass research and monitoring across the Great Barrier Reef, Great Sandy Strait and northern Australia.

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Mangroves

Our projects focus on monitoring, assessing, and restoring mangrove ecosystems to address environmental changes and impacts. We provide expert advice, conduct detailed floristic surveys, and develop effective mitigation strategies.

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Marine megafauna

We use a combination of conventional and innovative research using cutting-edge technology to monitor the trends in the abundance, distribution and habitat use of megafauna across Australia and globally.

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eDNA and technology

Technology is revolutionising the way scientists monitor, research and uncover new information about habitats and species. We are at the forefront of testing the feasibility of new technologies, including eDNA, drones and AI.

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Water quality: catchment to reef

We play a major role in monitoring the condition and tracking long-term trends of water quality entering the Great Barrier Reef. We work closely with cane farmers and graziers to help reduce runoff.

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Coral reef habitats

Our scientists undertake multiple monitoring programs to provide governments, industries and communities with essential data on the condition of coral habitats.

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Fish habitats

We monitor fish habitats and species in both freshwater and marine environments. This research monitors fish populations, tracks invasive fish species and helps understand fish communities.

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We are James Cook University's Centre for Tropical Water and Aquatic Ecosystem Research (TropWATER). We lead influential research on tropical water ecosystems across northern Australia, and beyond, contributing to their sustainable management and global understanding.

About us

Why reef conservation runs on relationships, with Dr Katie Chartrand

1 June 2026

Why reef conservation runs on relationships, with Dr Katie Chartrand

Lasting impacts on coral and reef fish six years after Cyclone Debbie

13 April 2026

Lasting impacts on coral and reef fish six years after Cyclone Debbie

Highlighting the experiences of women in science

11 February 2026

Highlighting the experiences of women in science

Student work experience: My week with the Marine Megafauna team

24 November 2025

Student work experience: My week with the Marine Megafauna team

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Our services and capabilities

We provide science-based solutions, stakeholder training, and innovative monitoring technologies. Our capabilities include water quality and eDNA labs, specialised training programs, technology development, and a range of environmental assessments and restoration efforts.

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Led by Director Professor Damien Burrows, our centre includes 150 researchers and over 100 post-graduate students. Discover the passionate minds driving innovation in our field.

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